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The Canadian VirusSeq Data Portal and Duotang: open resources for SARS-CoV-2 viral sequences and genomic epidemiology.
Gill EE, Jia B, Murall CL, Poujol R, Anwar MZ, John NS, Richardsson J, Hobb A, Olabode AS, Lepsa A, Duggan AT, Tyler AD, N'Guessan A, Kachru A, Chan B, Yoshida C, Yung CK, Bujold D, Andric D, Su E, Griffiths EJ, Van Domselaar G, Jolly GW, Ward HKE, Feher H, Baker J, Simpson JT, Uddin J, Ragoussis J, Eubank J, Fritz JH, Gálvez JH, Fang K, Cullion K, Rivera L, Xiang L, Croxen MA, Shiell M, Prystajecky N, Quirion PO, Bajari R, Rich S, Mubareka S, Moreira S, Cain S, Sutcliffe SG, Kraemer SA, Alturmessov Y, Joly Y, Cphln Consortium, CanCOGeN Consortium, VirusSeq Data Portal Academic And Health Network, Fiume M, Snutch TP, Bell C, Lopez-Correa C, Hussin JG, Joy JB, Colijn C, Gordon PMK, Hsiao WWL, Poon AFY, Knox NC, Courtot M, Stein L, Otto SP, Bourque G, Shapiro BJ, Brinkman FSL. Gill EE, et al. Among authors: shapiro bj. Microb Genom. 2024 Oct;10(10):001293. doi: 10.1099/mgen.0.001293. Microb Genom. 2024. PMID: 39401061 Free PMC article.
A small number of early introductions seeded widespread transmission of SARS-CoV-2 in Québec, Canada.
Murall CL, Fournier E, Galvez JH, N'Guessan A, Reiling SJ, Quirion PO, Naderi S, Roy AM, Chen SH, Stretenowich P, Bourgey M, Bujold D, Gregoire R, Lepage P, St-Cyr J, Willet P, Dion R, Charest H, Lathrop M, Roger M, Bourque G, Ragoussis J, Shapiro BJ, Moreira S. Murall CL, et al. Among authors: shapiro bj. Genome Med. 2021 Oct 28;13(1):169. doi: 10.1186/s13073-021-00986-9. Genome Med. 2021. PMID: 34706766 Free PMC article.
Outbreak investigation of SARS-CoV-2 transmission in an emergency childcare centre.
Soto JC, Barakat M, Hutter JA, Kiely M, Moreira S, Shapiro BJ, Murall CL, Parenteau N, Désilets J, Lessard R. Soto JC, et al. Among authors: shapiro bj. Can J Public Health. 2021 Aug;112(4):566-575. doi: 10.17269/s41997-021-00544-1. Epub 2021 May 28. Can J Public Health. 2021. PMID: 34047966 Free PMC article.
Population Genomics Approaches for Genetic Characterization of SARS-CoV-2 Lineages.
Mostefai F, Gamache I, N'Guessan A, Pelletier J, Huang J, Murall CL, Pesaranghader A, Gaonac'h-Lovejoy V, Hamelin DJ, Poujol R, Grenier JC, Smith M, Caron E, Craig M, Wolf G, Krishnaswamy S, Shapiro BJ, Hussin JG. Mostefai F, et al. Among authors: shapiro bj. Front Med (Lausanne). 2022 Feb 21;9:826746. doi: 10.3389/fmed.2022.826746. eCollection 2022. Front Med (Lausanne). 2022. PMID: 35265640 Free PMC article.
Does diversity beget diversity in microbiomes?
Madi N, Vos M, Murall CL, Legendre P, Shapiro BJ. Madi N, et al. Among authors: shapiro bj. Elife. 2020 Nov 20;9:e58999. doi: 10.7554/eLife.58999. Elife. 2020. PMID: 33215610 Free PMC article.
Vibrio cholerae genomic diversity within and between patients.
Levade I, Terrat Y, Leducq JB, Weil AA, Mayo-Smith LM, Chowdhury F, Khan AI, Boncy J, Buteau J, Ivers LC, Ryan ET, Charles RC, Calderwood SB, Qadri F, Harris JB, LaRocque RC, Shapiro BJ. Levade I, et al. Among authors: shapiro bj. Microb Genom. 2017 Dec;3(12):e000142. doi: 10.1099/mgen.0.000142. Microb Genom. 2017. PMID: 29306353 Free PMC article.
125 results