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Page 1
SciJava Ops: an improved algorithms framework for Fiji and beyond.
Selzer GJ, Rueden CT, Hiner MC, Evans EL, Kolb D, Wiedenmann M, Birkhold C, Buchholz TO, Helfrich S, Northan B, Walter A, Schindelin J, Pietzsch T, Saalfeld S, Berthold MR, Eliceiri KW. Selzer GJ, et al. Among authors: berthold mr. Front Bioinform. 2024 Sep 27;4:1435733. doi: 10.3389/fbinf.2024.1435733. eCollection 2024. Front Bioinform. 2024. PMID: 39399098 Free PMC article.
Integration of the ImageJ Ecosystem in the KNIME Analytics Platform.
Dietz C, Rueden CT, Helfrich S, Dobson ETA, Horn M, Eglinger J, Evans EL 3rd, McLean DT, Novitskaya T, Ricke WA, Sherer NM, Zijlstra A, Berthold MR, Eliceiri KW. Dietz C, et al. Among authors: berthold mr. Front Comput Sci. 2020 Mar;2:8. doi: 10.3389/fcomp.2020.00008. Epub 2020 Mar 17. Front Comput Sci. 2020. PMID: 32905440 Free PMC article.
Development of a neural rosette formation assay (RoFA) to identify neurodevelopmental toxicants and to characterize their transcriptome disturbances.
Dreser N, Madjar K, Holzer AK, Kapitza M, Scholz C, Kranaster P, Gutbier S, Klima S, Kolb D, Dietz C, Trefzer T, Meisig J, van Thriel C, Henry M, Berthold MR, Blüthgen N, Sachinidis A, Rahnenführer J, Hengstler JG, Waldmann T, Leist M. Dreser N, et al. Among authors: berthold mr. Arch Toxicol. 2020 Jan;94(1):151-171. doi: 10.1007/s00204-019-02612-5. Epub 2019 Nov 11. Arch Toxicol. 2020. PMID: 31712839
Whither systems medicine?
Apweiler R, Beissbarth T, Berthold MR, Blüthgen N, Burmeister Y, Dammann O, Deutsch A, Feuerhake F, Franke A, Hasenauer J, Hoffmann S, Höfer T, Jansen PL, Kaderali L, Klingmüller U, Koch I, Kohlbacher O, Kuepfer L, Lammert F, Maier D, Pfeifer N, Radde N, Rehm M, Roeder I, Saez-Rodriguez J, Sax U, Schmeck B, Schuppert A, Seilheimer B, Theis FJ, Vera J, Wolkenhauer O. Apweiler R, et al. Among authors: berthold mr. Exp Mol Med. 2018 Mar 2;50(3):e453. doi: 10.1038/emm.2017.290. Exp Mol Med. 2018. PMID: 29497170 Free PMC article. Review.
KNIME for reproducible cross-domain analysis of life science data.
Fillbrunn A, Dietz C, Pfeuffer J, Rahn R, Landrum GA, Berthold MR. Fillbrunn A, et al. Among authors: berthold mr. J Biotechnol. 2017 Nov 10;261:149-156. doi: 10.1016/j.jbiotec.2017.07.028. Epub 2017 Jul 27. J Biotechnol. 2017. PMID: 28757290 Free article. Review.
Automated workflows for modelling chemical fate, kinetics and toxicity.
Sala Benito JV, Paini A, Richarz AN, Meinl T, Berthold MR, Cronin MTD, Worth AP. Sala Benito JV, et al. Among authors: berthold mr. Toxicol In Vitro. 2017 Dec;45(Pt 2):249-257. doi: 10.1016/j.tiv.2017.03.004. Epub 2017 Mar 18. Toxicol In Vitro. 2017. PMID: 28323105 Free PMC article.
KNIME for Open-Source Bioimage Analysis: A Tutorial.
Dietz C, Berthold MR. Dietz C, et al. Among authors: berthold mr. Adv Anat Embryol Cell Biol. 2016;219:179-97. doi: 10.1007/978-3-319-28549-8_7. Adv Anat Embryol Cell Biol. 2016. PMID: 27207367
24 results