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Associations between SARS-CoV-2 Infection or COVID-19 Vaccination and Human Milk Composition: A Multi-Omics Approach.
Couvillion SP, Nakayasu ES, Webb-Robertson BM, Yang IH, Eder JG, Nicora CD, Bramer LM, Gao Y, Fox A, DeCarlo C, Yang X, Zhou M, Pace RM, Williams JE, McGuire MA, McGuire MK, Metz TO, Powell RL. Couvillion SP, et al. Among authors: gao y. J Nutr. 2024 Dec;154(12):3566-3574. doi: 10.1016/j.tjnut.2024.09.032. Epub 2024 Oct 11. J Nutr. 2024. PMID: 39396761
Elucidating regulatory processes of intense physical activity by multi-omics analysis.
Nakayasu ES, Gritsenko MA, Kim YM, Kyle JE, Stratton KG, Nicora CD, Munoz N, Navarro KM, Claborne D, Gao Y, Weitz KK, Paurus VL, Bloodsworth KJ, Allen KA, Bramer LM, Montes F, Clark KA, Tietje G, Teeguarden J, Burnum-Johnson KE. Nakayasu ES, et al. Among authors: gao y. Mil Med Res. 2023 Oct 18;10(1):48. doi: 10.1186/s40779-023-00477-5. Mil Med Res. 2023. PMID: 37853489 Free PMC article.
Tutorial: best practices and considerations for mass-spectrometry-based protein biomarker discovery and validation.
Nakayasu ES, Gritsenko M, Piehowski PD, Gao Y, Orton DJ, Schepmoes AA, Fillmore TL, Frohnert BI, Rewers M, Krischer JP, Ansong C, Suchy-Dicey AM, Evans-Molina C, Qian WJ, Webb-Robertson BM, Metz TO. Nakayasu ES, et al. Among authors: gao y. Nat Protoc. 2021 Aug;16(8):3737-3760. doi: 10.1038/s41596-021-00566-6. Epub 2021 Jul 9. Nat Protoc. 2021. PMID: 34244696 Free PMC article. Review.
PeakQC: A Software Tool for Omics-Agnostic Automated Quality Control of Mass Spectrometry Data.
Harrison A, Eder JG, Lalli PM, Munoz N, Gao Y, Clendinen CS, Orton DJ, Zheng X, Williams SM, Couvillion SP, Chu RK, Balasubramanian VK, Bhattacharjee A, Anderton CR, Pomraning KR, Burnum-Johnson KE, Liu T, Kyle JE, Bilbao A. Harrison A, et al. Among authors: gao y. J Am Soc Mass Spectrom. 2024 Nov 6;35(11):2680-2689. doi: 10.1021/jasms.4c00146. Epub 2024 Jul 16. J Am Soc Mass Spectrom. 2024. PMID: 39013167
Moisture modulates soil reservoirs of active DNA and RNA viruses.
Wu R, Davison MR, Gao Y, Nicora CD, Mcdermott JE, Burnum-Johnson KE, Hofmockel KS, Jansson JK. Wu R, et al. Among authors: gao y. Commun Biol. 2021 Aug 26;4(1):992. doi: 10.1038/s42003-021-02514-2. Commun Biol. 2021. PMID: 34446837 Free PMC article.
Plasma protein biomarkers predict the development of persistent autoantibodies and type 1 diabetes 6 months prior to the onset of autoimmunity.
Nakayasu ES, Bramer LM, Ansong C, Schepmoes AA, Fillmore TL, Gritsenko MA, Clauss TR, Gao Y, Piehowski PD, Stanfill BA, Engel DW, Orton DJ, Moore RJ, Qian WJ, Sechi S, Frohnert BI, Toppari J, Ziegler AG, Lernmark Å, Hagopian W, Akolkar B, Smith RD, Rewers MJ, Webb-Robertson BM, Metz TO; TEDDY Study Group. Nakayasu ES, et al. Among authors: gao y. Cell Rep Med. 2023 Jul 18;4(7):101093. doi: 10.1016/j.xcrm.2023.101093. Epub 2023 Jun 29. Cell Rep Med. 2023. PMID: 37390828 Free PMC article.
Mapping microhabitats of lignocellulose decomposition by a microbial consortium.
Veličković M, Wu R, Gao Y, Thairu MW, Veličković D, Munoz N, Clendinen CS, Bilbao A, Chu RK, Lalli PM, Zemaitis K, Nicora CD, Kyle JE, Orton D, Williams S, Zhu Y, Zhao R, Monroe ME, Moore RJ, Webb-Robertson BM, Bramer LM, Currie CR, Piehowski PD, Burnum-Johnson KE. Veličković M, et al. Among authors: gao y. Nat Chem Biol. 2024 Aug;20(8):1033-1043. doi: 10.1038/s41589-023-01536-7. Epub 2024 Feb 1. Nat Chem Biol. 2024. PMID: 38302607 Free PMC article.
Multi-scale signaling and tumor evolution in high-grade gliomas.
Liu J, Cao S, Imbach KJ, Gritsenko MA, Lih TM, Kyle JE, Yaron-Barir TM, Binder ZA, Li Y, Strunilin I, Wang YT, Tsai CF, Ma W, Chen L, Clark NM, Shinkle A, Naser Al Deen N, Caravan W, Houston A, Simin FA, Wyczalkowski MA, Wang LB, Storrs E, Chen S, Illindala R, Li YD, Jayasinghe RG, Rykunov D, Cottingham SL, Chu RK, Weitz KK, Moore RJ, Sagendorf T, Petyuk VA, Nestor M, Bramer LM, Stratton KG, Schepmoes AA, Couvillion SP, Eder J, Kim YM, Gao Y, Fillmore TL, Zhao R, Monroe ME, Southard-Smith AN, Li YE, Jui-Hsien Lu R, Johnson JL, Wiznerowicz M, Hostetter G, Newton CJ, Ketchum KA, Thangudu RR, Barnholtz-Sloan JS, Wang P, Fenyö D, An E, Thiagarajan M, Robles AI, Mani DR, Smith RD, Porta-Pardo E, Cantley LC, Iavarone A, Chen F, Mesri M, Nasrallah MP, Zhang H, Resnick AC, Chheda MG, Rodland KD, Liu T, Ding L; Philadelphia Coalition for a Cure; Clinical Proteomic Tumor Analysis Consortium. Liu J, et al. Among authors: gao y. Cancer Cell. 2024 Jul 8;42(7):1217-1238.e19. doi: 10.1016/j.ccell.2024.06.004. Cancer Cell. 2024. PMID: 38981438 Free article.
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