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Machine learning for metabolic engineering: A review.
Lawson CE, Martí JM, Radivojevic T, Jonnalagadda SVR, Gentz R, Hillson NJ, Peisert S, Kim J, Simmons BA, Petzold CJ, Singer SW, Mukhopadhyay A, Tanjore D, Dunn JG, Garcia Martin H. Lawson CE, et al. Among authors: kim j. Metab Eng. 2021 Jan;63:34-60. doi: 10.1016/j.ymben.2020.10.005. Epub 2020 Nov 19. Metab Eng. 2021. PMID: 33221420 Free article. Review.
High-Throughput Large-Scale Targeted Proteomics Assays for Quantifying Pathway Proteins in Pseudomonas putida KT2440.
Gao Y, Fillmore TL, Munoz N, Bentley GJ, Johnson CW, Kim J, Meadows JA, Zucker JD, Burnet MC, Lipton AK, Bilbao A, Orton DJ, Kim YM, Moore RJ, Robinson EW, Baker SE, Webb-Robertson BM, Guss AM, Gladden JM, Beckham GT, Magnuson JK, Burnum-Johnson KE. Gao Y, et al. Among authors: kim ym, kim j. Front Bioeng Biotechnol. 2020 Dec 2;8:603488. doi: 10.3389/fbioe.2020.603488. eCollection 2020. Front Bioeng Biotechnol. 2020. PMID: 33425868 Free PMC article.
Multi-Omics Driven Metabolic Network Reconstruction and Analysis of Lignocellulosic Carbon Utilization in Rhodosporidium toruloides.
Kim J, Coradetti ST, Kim YM, Gao Y, Yaegashi J, Zucker JD, Munoz N, Zink EM, Burnum-Johnson KE, Baker SE, Simmons BA, Skerker JM, Gladden JM, Magnuson JK. Kim J, et al. Among authors: kim ym. Front Bioeng Biotechnol. 2021 Jan 8;8:612832. doi: 10.3389/fbioe.2020.612832. eCollection 2020. Front Bioeng Biotechnol. 2021. PMID: 33585414 Free PMC article.
Further engineering of R. toruloides for the production of terpenes from lignocellulosic biomass.
Kirby J, Geiselman GM, Yaegashi J, Kim J, Zhuang X, Tran-Gyamfi MB, Prahl JP, Sundstrom ER, Gao Y, Munoz N, Burnum-Johnson KE, Benites VT, Baidoo EEK, Fuhrmann A, Seibel K, Webb-Robertson BM, Zucker J, Nicora CD, Tanjore D, Magnuson JK, Skerker JM, Gladden JM. Kirby J, et al. Among authors: kim j. Biotechnol Biofuels. 2021 Apr 21;14(1):101. doi: 10.1186/s13068-021-01950-w. Biotechnol Biofuels. 2021. PMID: 33883010 Free PMC article.
Integration of Proteomics and Metabolomics Into the Design, Build, Test, Learn Cycle to Improve 3-Hydroxypropionic Acid Production in Aspergillus pseudoterreus.
Pomraning KR, Dai Z, Munoz N, Kim YM, Gao Y, Deng S, Kim J, Hofstad BA, Swita MS, Lemmon T, Collett JR, Panisko EA, Webb-Robertson BM, Zucker JD, Nicora CD, De Paoli H, Baker SE, Burnum-Johnson KE, Hillson NJ, Magnuson JK. Pomraning KR, et al. Among authors: kim ym, kim j. Front Bioeng Biotechnol. 2021 Apr 7;9:603832. doi: 10.3389/fbioe.2021.603832. eCollection 2021. Front Bioeng Biotechnol. 2021. PMID: 33898398 Free PMC article.
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