Refsgaard JC - Search Results

1

Clinical and proteomic profiles of chronic kidney disease in heart failure with reduced and preserved ejection fraction.

Voordes GHD, Voors AA, Hoegl A, Madsen CT, van Essen BJ, Ouwerkerk W, Tromp J, de la Rambelje MA, Grønborg M, Refsgaard JC, Lang CC, Barascuk-Michaelsen N, Damman K. Voordes GHD, et al. Among authors: refsgaard jc. Int J Cardiol. 2024 Dec 15;417:132580. doi: 10.1016/j.ijcard.2024.132580. Epub 2024 Sep 19. Int J Cardiol. 2024. PMID: 39306286 Free article.

2

Deorphanizing Peptides Using Structure Prediction.

Teufel F, Refsgaard JC, Kasimova MA, Deibler K, Madsen CT, Stahlhut C, Grønborg M, Winther O, Madsen D. Teufel F, et al. Among authors: refsgaard jc. J Chem Inf Model. 2023 May 8;63(9):2651-2655. doi: 10.1021/acs.jcim.3c00378. Epub 2023 Apr 24. J Chem Inf Model. 2023. PMID: 37092865

3

DeepPeptide predicts cleaved peptides in proteins using conditional random fields.

Teufel F, Refsgaard JC, Madsen CT, Stahlhut C, Grønborg M, Winther O, Madsen D. Teufel F, et al. Among authors: refsgaard jc. Bioinformatics. 2023 Oct 3;39(10):btad616. doi: 10.1093/bioinformatics/btad616. Bioinformatics. 2023. PMID: 37812217 Free PMC article.

4

Combining mass spectrometry and machine learning to discover bioactive peptides.

Madsen CT, Refsgaard JC, Teufel FG, Kjærulff SK, Wang Z, Meng G, Jessen C, Heljo P, Jiang Q, Zhao X, Wu B, Zhou X, Tang Y, Jeppesen JF, Kelstrup CD, Buckley ST, Tullin S, Nygaard-Jensen J, Chen X, Zhang F, Olsen JV, Han D, Grønborg M, de Lichtenberg U. Madsen CT, et al. Among authors: refsgaard jc. Nat Commun. 2022 Oct 20;13(1):6235. doi: 10.1038/s41467-022-34031-z. Nat Commun. 2022. PMID: 36266275 Free PMC article.

5

Avoiding abundance bias in the functional annotation of post-translationally modified proteins.

Schölz C, Lyon D, Refsgaard JC, Jensen LJ, Choudhary C, Weinert BT. Schölz C, et al. Among authors: refsgaard jc. Nat Methods. 2015 Nov;12(11):1003-4. doi: 10.1038/nmeth.3621. Nat Methods. 2015. PMID: 26513550 No abstract available.

6

Oncogenic Mutations Rewire Signaling Pathways by Switching Protein Recruitment to Phosphotyrosine Sites.

Lundby A, Franciosa G, Emdal KB, Refsgaard JC, Gnosa SP, Bekker-Jensen DB, Secher A, Maurya SR, Paul I, Mendez BL, Kelstrup CD, Francavilla C, Kveiborg M, Montoya G, Jensen LJ, Olsen JV. Lundby A, et al. Among authors: refsgaard jc. Cell. 2019 Oct 3;179(2):543-560.e26. doi: 10.1016/j.cell.2019.09.008. Cell. 2019. PMID: 31585087 Free article.

7

Improving Peptide-Spectrum Matching by Fragmentation Prediction Using Hidden Markov Models.

Kirik U, Refsgaard JC, Jensen LJ. Kirik U, et al. Among authors: refsgaard jc. J Proteome Res. 2019 Jun 7;18(6):2385-2396. doi: 10.1021/acs.jproteome.8b00499. Epub 2019 May 22. J Proteome Res. 2019. PMID: 31074280

8

Systems Analysis for Interpretation of Phosphoproteomics Data.

Munk S, Refsgaard JC, Olsen JV. Munk S, et al. Among authors: refsgaard jc. Methods Mol Biol. 2016;1355:341-60. doi: 10.1007/978-1-4939-3049-4_23. Methods Mol Biol. 2016. PMID: 26584937 Review.

9

Impacts of land use, climate change and hydrological model structure on nitrate fluxes: Magnitudes and uncertainties.

Seidenfaden IK, Sonnenborg TO, Børgesen CD, Trolle D, Olesen JE, Refsgaard JC. Seidenfaden IK, et al. Among authors: refsgaard jc. Sci Total Environ. 2022 Jul 15;830:154671. doi: 10.1016/j.scitotenv.2022.154671. Epub 2022 Mar 22. Sci Total Environ. 2022. PMID: 35331772

10

Sustainable ecosystem governance under changing climate and land use: An introduction.

Hasler B, Hyytiäinen K, Refsgaard JC, Smart JCR, Tonderski K. Hasler B, et al. Among authors: refsgaard jc. Ambio. 2019 Nov;48(11):1235-1239. doi: 10.1007/s13280-019-01269-9. Ambio. 2019. PMID: 31606884 Free PMC article. No abstract available.

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