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Proteogenomic reconstruction of organ-specific metabolic networks in an environmental sentinel species, the amphipod Gammarus fossarum.
Koenig N, Baa-Puyoulet P, Lafont A, Lorenzo-Colina I, Navratil V, Leprêtre M, Sugier K, Delorme N, Garnero L, Queau H, Gaillard JC, Kielbasa M, Ayciriex S, Calevro F, Chaumot A, Charles H, Armengaud J, Geffard O, Degli Esposti D. Koenig N, et al. Among authors: armengaud j. Comp Biochem Physiol Part D Genomics Proteomics. 2024 Dec;52:101323. doi: 10.1016/j.cbd.2024.101323. Epub 2024 Sep 10. Comp Biochem Physiol Part D Genomics Proteomics. 2024. PMID: 39276751
A second [2Fe-2S] ferredoxin from Sphingomonas sp. Strain RW1 can function as an electron donor for the dioxin dioxygenase.
Armengaud J, Gaillard J, Timmis KN. Armengaud J, et al. J Bacteriol. 2000 Apr;182(8):2238-44. doi: 10.1128/JB.182.8.2238-2244.2000. J Bacteriol. 2000. PMID: 10735867 Free PMC article.
An open reading frame (fdx3) that could potentially specify a new ferredoxin has been identified downstream of dxnA1A2, a two-cistron gene (J. Armengaud, B. Happe, and K. N. Timmis, J. Bacteriol. 180:3954-3966, 1998). In the present study, we report a biochem …
An open reading frame (fdx3) that could potentially specify a new ferredoxin has been identified downstream of dxnA1A2, a two-cistron gene ( …
Proteomics-based refinement of Deinococcus deserti genome annotation reveals an unwonted use of non-canonical translation initiation codons.
Baudet M, Ortet P, Gaillard JC, Fernandez B, Guérin P, Enjalbal C, Subra G, de Groot A, Barakat M, Dedieu A, Armengaud J. Baudet M, et al. Among authors: armengaud j. Mol Cell Proteomics. 2010 Feb;9(2):415-26. doi: 10.1074/mcp.M900359-MCP200. Epub 2009 Oct 29. Mol Cell Proteomics. 2010. PMID: 19875382 Free PMC article.
Non-model organisms, a species endangered by proteogenomics.
Armengaud J, Trapp J, Pible O, Geffard O, Chaumot A, Hartmann EM. Armengaud J, et al. J Proteomics. 2014 Jun 13;105:5-18. doi: 10.1016/j.jprot.2014.01.007. Epub 2014 Jan 16. J Proteomics. 2014. PMID: 24440519 Review.
348 results