Bergman DR - Search Results

1

Agent-Based Modeling of Virtual Tumors Reveals the Critical Influence of Microenvironmental Complexity on Immunotherapy Efficacy.

Wang Y, Bergman DR, Trujillo E, Fernald AA, Li L, Pearson AT, Sweis RF, Jackson TL. Wang Y, et al. Among authors: bergman dr. Cancers (Basel). 2024 Aug 23;16(17):2942. doi: 10.3390/cancers16172942. Cancers (Basel). 2024. PMID: 39272799 Free PMC article.

2

A validated mathematical model of FGFR3-mediated tumor growth reveals pathways to harness the benefits of combination targeted therapy and immunotherapy in bladder cancer.

Okuneye K, Bergman D, Bloodworth JC, Pearson AT, Sweis RF, Jackson TL. Okuneye K, et al. Comput Syst Oncol. 2021 Jun;1(2):e1019. doi: 10.1002/cso2.1019. Epub 2021 May 19. Comput Syst Oncol. 2021. PMID: 34984415 Free PMC article.

3

A global method for fast simulations of molecular dynamics in multiscale agent-based models of biological tissues.

Bergman D, Sweis RF, Pearson AT, Nazari F, Jackson TL. Bergman D, et al. iScience. 2022 May 13;25(6):104387. doi: 10.1016/j.isci.2022.104387. eCollection 2022 Jun 17. iScience. 2022. PMID: 35637730 Free PMC article.

4

Implementing a global approach for efficiently simulating molecular dynamics in agent-based models of biological tissue.

Bergman D, Jackson TL. Bergman D, et al. STAR Protoc. 2022 Oct 25;3(4):101777. doi: 10.1016/j.xpro.2022.101777. eCollection 2022 Dec 16. STAR Protoc. 2022. PMID: 36313535 Free PMC article.

5

Phenotype switching in a global method for agent-based models of biological tissue.

Bergman D, Jackson TL. Bergman D, et al. PLoS One. 2023 Feb 13;18(2):e0281672. doi: 10.1371/journal.pone.0281672. eCollection 2023. PLoS One. 2023. PMID: 36780481 Free PMC article.

6

Mathematical model predicts tumor control patterns induced by fast and slow cytotoxic T lymphocyte killing mechanisms.

Wang Y, Bergman DR, Trujillo E, Pearson AT, Sweis RF, Jackson TL. Wang Y, et al. Among authors: bergman dr. Sci Rep. 2023 Dec 18;13(1):22541. doi: 10.1038/s41598-023-49467-6. Sci Rep. 2023. PMID: 38110479 Free PMC article.

7

Connecting Agent-Based Models with High-Dimensional Parameter Spaces to Multidimensional Data Using SMoRe ParS: A Surrogate Modeling Approach.

Bergman DR, Norton KA, Jain HV, Jackson T. Bergman DR, et al. Bull Math Biol. 2023 Dec 30;86(1):11. doi: 10.1007/s11538-023-01240-6. Bull Math Biol. 2023. PMID: 38159216 Free PMC article.

8

Dysregulated FGFR3 signaling alters the immune landscape in bladder cancer and presents therapeutic possibilities in an agent-based model.

Bergman DR, Wang Y, Trujillo E, Fernald AA, Li L, Pearson AT, Sweis RF, Jackson TL. Bergman DR, et al. Front Immunol. 2024 Mar 7;15:1358019. doi: 10.3389/fimmu.2024.1358019. eCollection 2024. Front Immunol. 2024. PMID: 38515743 Free PMC article.

9

SMoRe GloS: An efficient and flexible framework for inferring global sensitivity of agent-based model parameters.

Bergman DR, Jackson T, Jain HV, Norton KA. Bergman DR, et al. bioRxiv [Preprint]. 2024 Sep 22:2024.09.18.613723. doi: 10.1101/2024.09.18.613723. bioRxiv. 2024. PMID: 39345435 Free PMC article. Preprint.

10

Divergent Resistance Mechanisms to Immunotherapy Explain Responses in Different Skin Cancers.

Dollinger E, Bergman D, Zhou P, Atwood SX, Nie Q. Dollinger E, et al. Cancers (Basel). 2020 Oct 13;12(10):2946. doi: 10.3390/cancers12102946. Cancers (Basel). 2020. PMID: 33065980 Free PMC article.

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