Ma J - Search Results

1

Nucleolus and centromere Tyramide Signal Amplification-Seq reveals variable localization of heterochromatin in different cell types.

Kumar P, Gholamalamdari O, Zhang Y, Zhang L, Vertii A, van Schaik T, Peric-Hupkes D, Sasaki T, Gilbert DM, van Steensel B, Ma J, Kaufman PD, Belmont AS. Kumar P, et al. Among authors: ma j. Commun Biol. 2024 Sep 13;7(1):1135. doi: 10.1038/s42003-024-06838-7. Commun Biol. 2024. PMID: 39271748 Free PMC article.

2

Tracing the evolution of lineage-specific transcription factor binding sites in a birth-death framework.

Yokoyama KD, Zhang Y, Ma J. Yokoyama KD, et al. Among authors: ma j. PLoS Comput Biol. 2014 Aug 21;10(8):e1003771. doi: 10.1371/journal.pcbi.1003771. eCollection 2014 Aug. PLoS Comput Biol. 2014. PMID: 25144359 Free PMC article.

3

Liver ChIP-seq analysis in FGF19-treated mice reveals SHP as a global transcriptional partner of SREBP-2.

Kim YC, Byun S, Zhang Y, Seok S, Kemper B, Ma J, Kemper JK. Kim YC, et al. Among authors: ma j. Genome Biol. 2015 Dec 4;16:268. doi: 10.1186/s13059-015-0835-6. Genome Biol. 2015. PMID: 26634251 Free PMC article.

4

ADAR2 regulates RNA stability by modifying access of decay-promoting RNA-binding proteins.

Anantharaman A, Tripathi V, Khan A, Yoon JH, Singh DK, Gholamalamdari O, Guang S, Ohlson J, Wahlstedt H, Öhman M, Jantsch MF, Conrad NK, Ma J, Gorospe M, Prasanth SG, Prasanth KV. Anantharaman A, et al. Among authors: ma j. Nucleic Acids Res. 2017 Apr 20;45(7):4189-4201. doi: 10.1093/nar/gkw1304. Nucleic Acids Res. 2017. PMID: 28053121 Free PMC article.

5

PSIP1/p75 promotes tumorigenicity in breast cancer cells by promoting the transcription of cell cycle genes.

Singh DK, Gholamalamdari O, Jadaliha M, Ling Li X, Lin YC, Zhang Y, Guang S, Hashemikhabir S, Tiwari S, Zhu YJ, Khan A, Thomas A, Chakraborty A, Macias V, Balla AK, Bhargava R, Janga SC, Ma J, Prasanth SG, Lal A, Prasanth KV. Singh DK, et al. Among authors: ma j. Carcinogenesis. 2017 Oct 1;38(10):966-975. doi: 10.1093/carcin/bgx062. Carcinogenesis. 2017. PMID: 28633434 Free PMC article.

6

AhR and SHP regulate phosphatidylcholine and S-adenosylmethionine levels in the one-carbon cycle.

Kim YC, Seok S, Byun S, Kong B, Zhang Y, Guo G, Xie W, Ma J, Kemper B, Kemper JK. Kim YC, et al. Among authors: ma j. Nat Commun. 2018 Feb 7;9(1):540. doi: 10.1038/s41467-018-03060-y. Nat Commun. 2018. PMID: 29416063 Free PMC article.

7

CRISPR/Cas9-mediated knock-in of an optimized TetO repeat for live cell imaging of endogenous loci.

Tasan I, Sustackova G, Zhang L, Kim J, Sivaguru M, HamediRad M, Wang Y, Genova J, Ma J, Belmont AS, Zhao H. Tasan I, et al. Among authors: ma j. Nucleic Acids Res. 2018 Sep 28;46(17):e100. doi: 10.1093/nar/gky501. Nucleic Acids Res. 2018. PMID: 29912475 Free PMC article.

8

Continuous-Trait Probabilistic Model for Comparing Multi-species Functional Genomic Data.

Yang Y, Gu Q, Zhang Y, Sasaki T, Crivello J, O'Neill RJ, Gilbert DM, Ma J. Yang Y, et al. Among authors: ma j. Cell Syst. 2018 Aug 22;7(2):208-218.e11. doi: 10.1016/j.cels.2018.05.022. Epub 2018 Jun 20. Cell Syst. 2018. PMID: 29936186 Free PMC article.

9

Predicting CTCF-mediated chromatin loops using CTCF-MP.

Zhang R, Wang Y, Yang Y, Zhang Y, Ma J. Zhang R, et al. Among authors: ma j. Bioinformatics. 2018 Jul 1;34(13):i133-i141. doi: 10.1093/bioinformatics/bty248. Bioinformatics. 2018. PMID: 29949986 Free PMC article.

10

Mapping 3D genome organization relative to nuclear compartments using TSA-Seq as a cytological ruler.

Chen Y, Zhang Y, Wang Y, Zhang L, Brinkman EK, Adam SA, Goldman R, van Steensel B, Ma J, Belmont AS. Chen Y, et al. Among authors: ma j. J Cell Biol. 2018 Nov 5;217(11):4025-4048. doi: 10.1083/jcb.201807108. Epub 2018 Aug 28. J Cell Biol. 2018. PMID: 30154186 Free PMC article.

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