Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.

Https

The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation

Search Page

Filters

My Custom Filters

Publication date

Text availability

Article attribute

Article type

Additional filters

Article Language

Species

Sex

Age

Other

Search Results

575 results

Filters applied: . Clear all
Results are displayed in a computed author sort order. The Publication Date timeline is not available.
Page 1
kb_DRAM: annotation and metabolic profiling of genomes with DRAM in KBase.
Shaffer M, Borton MA, Bolduc B, Faria JP, Flynn RM, Ghadermazi P, Edirisinghe JN, Wood-Charlson EM, Miller CS, Chan SHJ, Sullivan MB, Henry CS, Wrighton KC. Shaffer M, et al. Bioinformatics. 2023 Apr 3;39(4):btad110. doi: 10.1093/bioinformatics/btad110. Bioinformatics. 2023. PMID: 36857575 Free PMC article.
Human-Gut Phages Harbor Sporulation Genes.
Schwartz DA, Rodríguez-Ramos JA, Shaffer M, Flynn RM, Daly RA, Wrighton KC, Lennon JT. Schwartz DA, et al. Among authors: shaffer m. mBio. 2023 Jun 27;14(3):e0018223. doi: 10.1128/mbio.00182-23. Epub 2023 Apr 12. mBio. 2023. PMID: 37042671 Free PMC article.
Spatial and temporal metagenomics of river compartments reveals viral community dynamics in an urban impacted stream.
Rodríguez-Ramos J, Oliverio A, Borton MA, Danczak R, Mueller BM, Schulz H, Ellenbogen J, Flynn RM, Daly RA, Schopflin L, Shaffer M, Goldman A, Lewandowski J, Stegen JC, Wrighton KC. Rodríguez-Ramos J, et al. Among authors: shaffer m. bioRxiv [Preprint]. 2023 Apr 4:2023.04.04.535500. doi: 10.1101/2023.04.04.535500. bioRxiv. 2023. PMID: 37066413 Free PMC article. Preprint.
A conserved interdomain microbial network underpins cadaver decomposition despite environmental variables.
Burcham ZM, Belk AD, McGivern BB, Bouslimani A, Ghadermazi P, Martino C, Shenhav L, Zhang AR, Shi P, Emmons A, Deel HL, Xu ZZ, Nieciecki V, Zhu Q, Shaffer M, Panitchpakdi M, Weldon KC, Cantrell K, Ben-Hur A, Reed SC, Humphry GC, Ackermann G, McDonald D, Chan SHJ, Connor M, Boyd D, Smith J, Watson JMS, Vidoli G, Steadman D, Lynne AM, Bucheli S, Dorrestein PC, Wrighton KC, Carter DO, Knight R, Metcalf JL. Burcham ZM, et al. Among authors: shaffer m. Nat Microbiol. 2024 Mar;9(3):595-613. doi: 10.1038/s41564-023-01580-y. Epub 2024 Feb 12. Nat Microbiol. 2024. PMID: 38347104 Free PMC article.
Gut microbiota carbon and sulfur metabolisms support Salmonella infections.
Leleiwi I, Kokkinias K, Kim Y, Baniasad M, Shaffer M, Sabag-Daigle A, Daly RA, Flynn RM, Wysocki VH, Ahmer BMM, Borton MA, Wrighton KC. Leleiwi I, et al. Among authors: shaffer m. ISME J. 2024 Jan 8;18(1):wrae187. doi: 10.1093/ismejo/wrae187. ISME J. 2024. PMID: 39404095 Free PMC article.
575 results