Clark TG - Search Results

1

Exploring the Antimicrobial Resistance Profile of Salmonella typhi and Its Clinical Burden.

Asghar M, Khan TA, Séraphin MN, Schimke LF, Cabral-Marques O, Haq IU, Farooqi ZU, Campino S, Ullah I, Clark TG. Asghar M, et al. Among authors: clark tg. Antibiotics (Basel). 2024 Aug 14;13(8):765. doi: 10.3390/antibiotics13080765. Antibiotics (Basel). 2024. PMID: 39200066 Free PMC article.

2

A Bayesian approach using covariance of single nucleotide polymorphism data to detect differences in linkage disequilibrium patterns between groups of individuals.

Clark TG, Campino SG, Anastasi E, Auburn S, Teo YY, Small K, Rockett KA, Kwiatkowski DP, Holmes CC. Clark TG, et al. Bioinformatics. 2010 Aug 15;26(16):1999-2003. doi: 10.1093/bioinformatics/btq327. Epub 2010 Jun 16. Bioinformatics. 2010. PMID: 20554688 Free PMC article.

3

VarB: a variation browsing and analysis tool for variants derived from next-generation sequencing data.

Preston MD, Manske M, Horner N, Assefa S, Campino S, Auburn S, Zongo I, Ouedraogo JB, Nosten F, Anderson T, Clark TG. Preston MD, et al. Among authors: clark tg. Bioinformatics. 2012 Nov 15;28(22):2983-5. doi: 10.1093/bioinformatics/bts557. Epub 2012 Sep 13. Bioinformatics. 2012. PMID: 22976080 Free PMC article.

4

A Poisson hierarchical modelling approach to detecting copy number variation in sequence coverage data.

Sepúlveda N, Campino SG, Assefa SA, Sutherland CJ, Pain A, Clark TG. Sepúlveda N, et al. Among authors: clark tg. BMC Genomics. 2013 Feb 26;14:128. doi: 10.1186/1471-2164-14-128. BMC Genomics. 2013. PMID: 23442253 Free PMC article.

5

estMOI: estimating multiplicity of infection using parasite deep sequencing data.

Assefa SA, Preston MD, Campino S, Ocholla H, Sutherland CJ, Clark TG. Assefa SA, et al. Among authors: clark tg. Bioinformatics. 2014 May 1;30(9):1292-4. doi: 10.1093/bioinformatics/btu005. Epub 2014 Jan 17. Bioinformatics. 2014. PMID: 24443379 Free PMC article.

6

PhyTB: Phylogenetic tree visualisation and sample positioning for M. tuberculosis.

Benavente ED, Coll F, Furnham N, McNerney R, Glynn JR, Campino S, Pain A, Mohareb FR, Clark TG. Benavente ED, et al. Among authors: clark tg. BMC Bioinformatics. 2015 May 13;16(1):155. doi: 10.1186/s12859-015-0603-3. BMC Bioinformatics. 2015. PMID: 25968323 Free PMC article.

7

Mycobacterium tuberculosis whole genome sequencing and protein structure modelling provides insights into anti-tuberculosis drug resistance.

Phelan J, Coll F, McNerney R, Ascher DB, Pires DE, Furnham N, Coeck N, Hill-Cawthorne GA, Nair MB, Mallard K, Ramsay A, Campino S, Hibberd ML, Pain A, Rigouts L, Clark TG. Phelan J, et al. Among authors: clark tg. BMC Med. 2016 Mar 23;14:31. doi: 10.1186/s12916-016-0575-9. BMC Med. 2016. PMID: 27005572 Free PMC article.

8

Removing the bottleneck in whole genome sequencing of Mycobacterium tuberculosis for rapid drug resistance analysis: a call to action.

McNerney R, Clark TG, Campino S, Rodrigues C, Dolinger D, Smith L, Cabibbe AM, Dheda K, Schito M. McNerney R, et al. Among authors: clark tg. Int J Infect Dis. 2017 Mar;56:130-135. doi: 10.1016/j.ijid.2016.11.422. Epub 2016 Dec 13. Int J Infect Dis. 2017. PMID: 27986491 Free article. Review.

9

The variability and reproducibility of whole genome sequencing technology for detecting resistance to anti-tuberculous drugs.

Phelan J, O'Sullivan DM, Machado D, Ramos J, Whale AS, O'Grady J, Dheda K, Campino S, McNerney R, Viveiros M, Huggett JF, Clark TG. Phelan J, et al. Among authors: clark tg. Genome Med. 2016 Dec 22;8(1):132. doi: 10.1186/s13073-016-0385-x. Genome Med. 2016. PMID: 28003022 Free PMC article.

10

Genetic diversity of next generation antimalarial targets: A baseline for drug resistance surveillance programmes.

Gomes AR, Ravenhall M, Benavente ED, Talman A, Sutherland C, Roper C, Clark TG, Campino S. Gomes AR, et al. Among authors: clark tg. Int J Parasitol Drugs Drug Resist. 2017 Aug;7(2):174-180. doi: 10.1016/j.ijpddr.2017.03.001. Epub 2017 Mar 9. Int J Parasitol Drugs Drug Resist. 2017. PMID: 28376349 Free PMC article.

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