Kaplan CD - Search Results

1

Structural basis of transcription: RNA polymerase II substrate binding and metal coordination using a free-electron laser.

Lin G, Barnes CO, Weiss S, Dutagaci B, Qiu C, Feig M, Song J, Lyubimov A, Cohen AE, Kaplan CD, Calero G. Lin G, et al. Among authors: kaplan cd. Proc Natl Acad Sci U S A. 2024 Sep 3;121(36):e2318527121. doi: 10.1073/pnas.2318527121. Epub 2024 Aug 27. Proc Natl Acad Sci U S A. 2024. PMID: 39190355

2

Structural basis of transcription: role of the trigger loop in substrate specificity and catalysis.

Wang D, Bushnell DA, Westover KD, Kaplan CD, Kornberg RD. Wang D, et al. Among authors: kaplan cd. Cell. 2006 Dec 1;127(5):941-54. doi: 10.1016/j.cell.2006.11.023. Cell. 2006. PMID: 17129781 Free PMC article.

3

A bridge to transcription by RNA polymerase.

Kaplan CD, Kornberg RD. Kaplan CD, et al. J Biol. 2008 Dec 2;7(10):39. doi: 10.1186/jbiol99. J Biol. 2008. PMID: 19090964 Free PMC article.

4

Tfb6, a previously unidentified subunit of the general transcription factor TFIIH, facilitates dissociation of Ssl2 helicase after transcription initiation.

Murakami K, Gibbons BJ, Davis RE, Nagai S, Liu X, Robinson PJ, Wu T, Kaplan CD, Kornberg RD. Murakami K, et al. Among authors: kaplan cd. Proc Natl Acad Sci U S A. 2012 Mar 27;109(13):4816-21. doi: 10.1073/pnas.1201448109. Epub 2012 Mar 12. Proc Natl Acad Sci U S A. 2012. PMID: 22411836 Free PMC article.

5

Trigger loop dynamics mediate the balance between the transcriptional fidelity and speed of RNA polymerase II.

Larson MH, Zhou J, Kaplan CD, Palangat M, Kornberg RD, Landick R, Block SM. Larson MH, et al. Among authors: kaplan cd. Proc Natl Acad Sci U S A. 2012 Apr 24;109(17):6555-60. doi: 10.1073/pnas.1200939109. Epub 2012 Apr 9. Proc Natl Acad Sci U S A. 2012. PMID: 22493230 Free PMC article.

6

From structure to systems: high-resolution, quantitative genetic analysis of RNA polymerase II.

Braberg H, Jin H, Moehle EA, Chan YA, Wang S, Shales M, Benschop JJ, Morris JH, Qiu C, Hu F, Tang LK, Fraser JS, Holstege FC, Hieter P, Guthrie C, Kaplan CD, Krogan NJ. Braberg H, et al. Among authors: kaplan cd. Cell. 2013 Aug 15;154(4):775-88. doi: 10.1016/j.cell.2013.07.033. Epub 2013 Aug 8. Cell. 2013. PMID: 23932120 Free PMC article.

7

Divergent contributions of conserved active site residues to transcription by eukaryotic RNA polymerases I and II.

Viktorovskaya OV, Engel KL, French SL, Cui P, Vandeventer PJ, Pavlovic EM, Beyer AL, Kaplan CD, Schneider DA. Viktorovskaya OV, et al. Among authors: kaplan cd. Cell Rep. 2013 Sep 12;4(5):974-84. doi: 10.1016/j.celrep.2013.07.044. Epub 2013 Aug 29. Cell Rep. 2013. PMID: 23994471 Free PMC article.

8

Transcription factors TFIIF and TFIIS promote transcript elongation by RNA polymerase II by synergistic and independent mechanisms.

Schweikhard V, Meng C, Murakami K, Kaplan CD, Kornberg RD, Block SM. Schweikhard V, et al. Among authors: kaplan cd. Proc Natl Acad Sci U S A. 2014 May 6;111(18):6642-7. doi: 10.1073/pnas.1405181111. Epub 2014 Apr 14. Proc Natl Acad Sci U S A. 2014. PMID: 24733897 Free PMC article.

9

Crystal Structure of a Transcribing RNA Polymerase II Complex Reveals a Complete Transcription Bubble.

Barnes CO, Calero M, Malik I, Graham BW, Spahr H, Lin G, Cohen AE, Brown IS, Zhang Q, Pullara F, Trakselis MA, Kaplan CD, Calero G. Barnes CO, et al. Among authors: kaplan cd. Mol Cell. 2015 Jul 16;59(2):258-69. doi: 10.1016/j.molcel.2015.06.034. Mol Cell. 2015. PMID: 26186291 Free PMC article.

10

High-Resolution Phenotypic Landscape of the RNA Polymerase II Trigger Loop.

Qiu C, Erinne OC, Dave JM, Cui P, Jin H, Muthukrishnan N, Tang LK, Babu SG, Lam KC, Vandeventer PJ, Strohner R, Van den Brulle J, Sze SH, Kaplan CD. Qiu C, et al. Among authors: kaplan cd. PLoS Genet. 2016 Nov 29;12(11):e1006321. doi: 10.1371/journal.pgen.1006321. eCollection 2016 Nov. PLoS Genet. 2016. PMID: 27898685 Free PMC article.

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