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The evolution of computational research in a data-centric world.
Deshpande D, Chhugani K, Ramesh T, Pellegrini M, Shiffman S, Abedalthagafi MS, Alqahtani S, Ye J, Liu XS, Leek JT, Brazma A, Ophoff RA, Rao G, Butte AJ, Moore JH, Katritch V, Mangul S. Deshpande D, et al. Cell. 2024 Aug 22;187(17):4449-4457. doi: 10.1016/j.cell.2024.07.045. Cell. 2024. PMID: 39178828 Review.
Unlocking capacities of viral genomics for the COVID-19 pandemic response.
Knyazev S, Chhugani K, Sarwal V, Ayyala R, Singh H, Karthikeyan S, Deshpande D, Comarova Z, Lu A, Porozov Y, Wu A, Abedalthagafi MS, Nagaraj SH, Smith AL, Skums P, Ladner J, Lam TT, Wu NC, Zelikovsky A, Knight R, Crandall KA, Mangul S. Knyazev S, et al. Among authors: deshpande d. ArXiv [Preprint]. 2021 Apr 28:arXiv:2104.14005v3. ArXiv. 2021. Update in: Nat Methods. 2022 Apr;19(4):374-380. doi: 10.1038/s41592-022-01444-z PMID: 33948451 Free PMC article. Updated. Preprint.
Analytical code sharing practices in biomedical research.
Sharma NK, Ayyala R, Deshpande D, Patel YM, Munteanu V, Ciorba D, Fiscutean A, Vahed M, Sarkar A, Guo R, Moore A, Darci-Maher N, Nogoy NA, Abedalthagafi MS, Mangul S. Sharma NK, et al. Among authors: deshpande d. bioRxiv [Preprint]. 2023 Aug 7:2023.07.31.551384. doi: 10.1101/2023.07.31.551384. bioRxiv. 2023. Update in: PeerJ Comput Sci. 2024 Jun 28;10:e2066. doi: 10.7717/peerj-cs.2066 PMID: 37609176 Free PMC article. Updated. Preprint.
Whole Blood Transcriptomics Identifies Subclasses of Pediatric Septic Shock.
Yang JO, Zinter MS, Pellegrini M, Wong MY, Gala K, Markovic D, Nadel B, Peng K, Do N, Mangul S, Nadkarni VM, Karlsberg A, Deshpande D, Butte MJ, Asaro L, Agus M, Sapru A. Yang JO, et al. Among authors: deshpande d. Res Sq [Preprint]. 2023 Aug 28:rs.3.rs-3267057. doi: 10.21203/rs.3.rs-3267057/v1. Res Sq. 2023. Update in: Crit Care. 2023 Dec 8;27(1):486. doi: 10.1186/s13054-023-04689-y PMID: 37693502 Free PMC article. Updated. Preprint.
Analytical code sharing practices in biomedical research.
Sharma NK, Ayyala R, Deshpande D, Patel Y, Munteanu V, Ciorba D, Bostan V, Fiscutean A, Vahed M, Sarkar A, Guo R, Moore A, Darci-Maher N, Nogoy N, Abedalthagafi M, Mangul S. Sharma NK, et al. Among authors: deshpande d. PeerJ Comput Sci. 2024 Jun 28;10:e2066. doi: 10.7717/peerj-cs.2066. eCollection 2024. PeerJ Comput Sci. 2024. PMID: 38983240 Free PMC article.
Pioneering Computational Culture Within Pharmacy Schools by Empowering Students With Data Science and Bioinformatics Skills.
Ronkowski C, Deshpande D, Sharma N, Vahed M, Patel YM, Gukasyan HJ, Wu M, Peng K, Church TD, Kim RE, Mirzaian E, Padula WV, Tomaszewski D, Ng TMH, Wong-Beringer A, Zaro J, Qato DM, Davies DL, Papadopoulos V, Mangul S. Ronkowski C, et al. Among authors: deshpande d. Am J Pharm Educ. 2024 Dec 12:101341. doi: 10.1016/j.ajpe.2024.101341. Online ahead of print. Am J Pharm Educ. 2024. PMID: 39674347
Integration of Ayurvedic and Allopathic treatment in hereditary breast and ovarian cancer patient with Germline BRCA1 mutation for long term disease free survival: A case report.
Sardeshmukh S, Deshmukh V, Kulkarni A, Gujar S, Awalkanthe V, Sardeshmukh N, Sardeshmukh B, Deshpande D, Deshpande A, Chavan S. Sardeshmukh S, et al. Among authors: deshpande d. J Ayurveda Integr Med. 2024 Nov-Dec;15(6):100999. doi: 10.1016/j.jaim.2024.100999. Epub 2024 Dec 10. J Ayurveda Integr Med. 2024. PMID: 39662423 Free article.
Ayurvedic perspective of dietary risk factors of colorectal cancers - A hospital-based case control study.
Sardeshmukh S, Deshmukh V, Godse V, Gujar S, Dalvi S, Kulkarni S, Bhuvad S, Sardeshmukh N, Sardeshmukh B, Deshpande D, Awalkanthe V, Salunkhe A, Redekar A, Vaidya S, Chavan S. Sardeshmukh S, et al. Among authors: deshpande d. J Ayurveda Integr Med. 2024 Nov-Dec;15(6):100969. doi: 10.1016/j.jaim.2024.100969. Epub 2024 Nov 21. J Ayurveda Integr Med. 2024. PMID: 39577139 Free PMC article.
Wastewater surveillance in post-omicron silent phase uncovers silent waves and cryptic transmission of SARS-CoV-2 variants; a yearlong study in Western India.
Rajput V, Pramanik R, Nannaware K, Malik V, Matra S, Kumar S, Joshi S, Kadam P, Bhalerao U, Tupekar M, Deshpande D, Shah P, Sangewar P, Gogate N, Boargaonkar R, Patil D, Kale S, Bhalerao A, Jain N, Shashidhara LS, Kamble S, Dastager S, Karmodiya K, Dharne M. Rajput V, et al. Among authors: deshpande d. Sci Total Environ. 2024 Dec 10;955:176833. doi: 10.1016/j.scitotenv.2024.176833. Epub 2024 Oct 11. Sci Total Environ. 2024. PMID: 39396788
416 results