Wang Z - Search Results

1

Adapting nanopore sequencing basecalling models for modification detection via incremental learning and anomaly detection.

Wang Z, Fang Y, Liu Z, Hao N, Zhang HH, Sun X, Que J, Ding H. Wang Z, et al. Nat Commun. 2024 Aug 21;15(1):7148. doi: 10.1038/s41467-024-51639-5. Nat Commun. 2024. PMID: 39169028 Free PMC article.

2

Adapting Nanopore Sequencing Basecalling Models for Modification Detection via Incremental Learning and Anomaly Detection.

Wang Z, Fang Y, Liu Z, Hao N, Zhang HH, Sun X, Que J, Ding H. Wang Z, et al. bioRxiv [Preprint]. 2023 Dec 20:2023.12.19.572449. doi: 10.1101/2023.12.19.572449. bioRxiv. 2023. Update in: Nat Commun. 2024 Aug 21;15(1):7148. doi: 10.1038/s41467-024-51639-5. PMID: 38187611 Free PMC article. Updated. Preprint.

3

The manatee variational autoencoder model for predicting gene expression alterations caused by transcription factor perturbations.

Yang Y, Seninge L, Wang Z, Oro A, Stuart JM, Ding H. Yang Y, et al. Among authors: wang z. Sci Rep. 2024 May 23;14(1):11794. doi: 10.1038/s41598-024-62620-z. Sci Rep. 2024. PMID: 38782963 Free PMC article.

4

Training Data Diversity Enhances the Basecalling of Novel RNA Modification-Induced Nanopore Sequencing Readouts.

Wang Z, Liu Z, Fang Y, Zhang HH, Sun X, Hao N, Que J, Ding H. Wang Z, et al. bioRxiv [Preprint]. 2024 Aug 30:2024.08.29.610342. doi: 10.1101/2024.08.29.610342. bioRxiv. 2024. Update in: Nat Commun. 2025 Jan 15;16(1):679. doi: 10.1038/s41467-025-55974-z. PMID: 39257777 Free PMC article. Updated. Preprint.

5

The Precise Basecalling of Short-Read Nanopore Sequencing.

Wang Z, Tu MJ, Song C, Liu Z, Wang KK, Chen S, Yu AM, Ding H. Wang Z, et al. Among authors: wang kk. bioRxiv [Preprint]. 2024 Sep 17:2024.09.12.612746. doi: 10.1101/2024.09.12.612746. bioRxiv. 2024. PMID: 39345391 Free PMC article. Preprint.

6

An Iterative Approach to Polish the Nanopore Sequencing Basecalling for Therapeutic RNA Quality Control.

Wang Z, Tu MJ, Liu Z, Wang KK, Fang Y, Hao N, Zhang HH, Que J, Sun X, Yu AM, Ding H. Wang Z, et al. Among authors: wang kk. bioRxiv [Preprint]. 2024 Sep 18:2024.09.12.612711. doi: 10.1101/2024.09.12.612711. bioRxiv. 2024. PMID: 39345479 Free PMC article. Preprint.

7

Training data diversity enhances the basecalling of novel RNA modification-induced nanopore sequencing readouts.

Wang Z, Liu Z, Fang Y, Zhang HH, Sun X, Hao N, Que J, Ding H. Wang Z, et al. Nat Commun. 2025 Jan 15;16(1):679. doi: 10.1038/s41467-025-55974-z. Nat Commun. 2025. PMID: 39814719 Free PMC article.

8

DEGAP: Dynamic elongation of a genome assembly path.

Huang Y, Wang Z, Schmidt MA, Su H, Xiong L, Zhang J. Huang Y, et al. Among authors: wang z. Brief Bioinform. 2024 Mar 27;25(3):bbae194. doi: 10.1093/bib/bbae194. Brief Bioinform. 2024. PMID: 38670160 Free PMC article.

9

Clinicopathological significance of deficient DNA mismatch repair and MLH1 promoter methylation in gastric adenosquamous carcinoma.

Gu Y, Liu Z, Sheng X, Dong L, Chen C, Xu H, Wang Z, Zhang B, Li Q, Wang Y, Yang Y, Peng Q, Zhu L, Yuan F, Wang C, Li A. Gu Y, et al. Among authors: wang z. Virchows Arch. 2025 Feb 4. doi: 10.1007/s00428-025-04044-2. Online ahead of print. Virchows Arch. 2025. PMID: 39904886

10

Pre-injection of exosomes can significantly suppress ovarian cancer growth by activating the immune system in mice.

Wang Y, Zhang C, Zeng H, Wang L, Wang Z, Han Z. Wang Y, et al. Among authors: wang z. Cancer Immunol Immunother. 2025 Feb 4;74(3):103. doi: 10.1007/s00262-025-03951-2. Cancer Immunol Immunother. 2025. PMID: 39904884

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