Jones DR - Search Results

1

Structural, Biochemical, and Phylogenetic Analysis of Bacterial and Fungal Carbohydrate Esterase Family 15 Glucuronoyl Esterases in the Rumen.

Gruninger RJ, Kevorkova M, Low KE, Jones DR, Worrall L, McAllister TA, Abbott DW. Gruninger RJ, et al. Among authors: jones dr. Protein J. 2024 Aug;43(4):910-922. doi: 10.1007/s10930-024-10221-0. Epub 2024 Aug 17. Protein J. 2024. PMID: 39153129 Free PMC article.

2

Discovery and characterization of family 39 glycoside hydrolases from rumen anaerobic fungi with polyspecific activity on rare arabinosyl substrates.

Jones DR, Uddin MS, Gruninger RJ, Pham TTM, Thomas D, Boraston AB, Briggs J, Pluvinage B, McAllister TA, Forster RJ, Tsang A, Selinger LB, Abbott DW. Jones DR, et al. J Biol Chem. 2017 Jul 28;292(30):12606-12620. doi: 10.1074/jbc.M117.789008. Epub 2017 Jun 6. J Biol Chem. 2017. PMID: 28588026 Free PMC article.

3

Mechanistic insights into the digestion of complex dietary fibre by the rumen microbiota using combinatorial high-resolution glycomics and transcriptomic analyses.

Badhan A, Low KE, Jones DR, Xing X, Milani MRM, Polo RO, Klassen L, Venketachalam S, Hahn MG, Abbott DW, McAllister TA. Badhan A, et al. Among authors: jones dr. Comput Struct Biotechnol J. 2021 Dec 9;20:148-164. doi: 10.1016/j.csbj.2021.12.009. eCollection 2022. Comput Struct Biotechnol J. 2021. PMID: 34976318 Free PMC article.

4

Identification of novel enzymes to enhance the ruminal digestion of barley straw.

Badhan A, Ribeiro GO Jr, Jones DR, Wang Y, Abbott DW, Di Falco M, Tsang A, McAllister TA. Badhan A, et al. Among authors: jones dr. Bioresour Technol. 2018 Jul;260:76-84. doi: 10.1016/j.biortech.2018.03.086. Epub 2018 Mar 28. Bioresour Technol. 2018. PMID: 29621684

5

A surrogate structural platform informed by ancestral reconstruction and resurrection of a putative carbohydrate binding module hybrid illuminates the neofunctionalization of a pectate lyase.

Jones DR, McLean R, Hobbs JK, Abbott DW. Jones DR, et al. J Struct Biol. 2019 Sep 1;207(3):279-286. doi: 10.1016/j.jsb.2019.06.003. Epub 2019 Jun 11. J Struct Biol. 2019. PMID: 31200020

6

Effect of ammonia fiber expansion-treated wheat straw and a recombinant fibrolytic enzyme on rumen microbiota and fermentation parameters, total tract digestibility, and performance of lambs.

Ribeiro GO, Gruninger RJ, Jones DR, Beauchemin KA, Yang WZ, Wang Y, Abbott DW, Tsang A, McAllister TA. Ribeiro GO, et al. Among authors: jones dr. J Anim Sci. 2020 May 1;98(5):skaa116. doi: 10.1093/jas/skaa116. J Anim Sci. 2020. PMID: 32369600 Free PMC article.

7

Quantifying fluorescent glycan uptake to elucidate strain-level variability in foraging behaviors of rumen bacteria.

Klassen L, Reintjes G, Tingley JP, Jones DR, Hehemann JH, Smith AD, Schwinghamer TD, Arnosti C, Jin L, Alexander TW, Amundsen C, Thomas D, Amann R, McAllister TA, Abbott DW. Klassen L, et al. Among authors: jones dr. Microbiome. 2021 Jan 22;9(1):23. doi: 10.1186/s40168-020-00975-x. Microbiome. 2021. PMID: 33482928 Free PMC article.

8

SACCHARIS: an automated pipeline to streamline discovery of carbohydrate active enzyme activities within polyspecific families and de novo sequence datasets.

Jones DR, Thomas D, Alger N, Ghavidel A, Inglis GD, Abbott DW. Jones DR, et al. Biotechnol Biofuels. 2018 Feb 5;11:27. doi: 10.1186/s13068-018-1027-x. eCollection 2018. Biotechnol Biofuels. 2018. PMID: 29441125 Free PMC article.

9

An Improved Kinetic Assay for the Characterization of Metal-Dependent Pectate Lyases.

Jones DR, McLean R, Abbott DW. Jones DR, et al. Methods Mol Biol. 2017;1588:37-44. doi: 10.1007/978-1-4939-6899-2_4. Methods Mol Biol. 2017. PMID: 28417359

10

Combinatorial Glycomic Analyses to Direct CAZyme Discovery for the Tailored Degradation of Canola Meal Non-Starch Dietary Polysaccharides.

Low KE, Xing X, Moote PE, Inglis GD, Venketachalam S, Hahn MG, King ML, Tétard-Jones CY, Jones DR, Willats WGT, Slominski BA, Abbott DW. Low KE, et al. Among authors: jones dr. Microorganisms. 2020 Nov 29;8(12):1888. doi: 10.3390/microorganisms8121888. Microorganisms. 2020. PMID: 33260318 Free PMC article.

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