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Introducing 'identification probability' for automated and transferable assessment of metabolite identification confidence in metabolomics and related studies.
Metz TO, Chang CH, Gautam V, Anjum A, Tian S, Wang F, Colby SM, Nunez JR, Blumer MR, Edison AS, Fiehn O, Jones DP, Li S, Morgan ET, Patti GJ, Ross DH, Shapiro MR, Williams AJ, Wishart DS. Metz TO, et al. Among authors: jones dp. bioRxiv [Preprint]. 2024 Jul 31:2024.07.30.605945. doi: 10.1101/2024.07.30.605945. bioRxiv. 2024. Update in: Anal Chem. 2024 Dec 19. doi: 10.1021/acs.analchem.4c04060 PMID: 39131324 Free PMC article. Updated. Preprint.
Large scale enzyme based xenobiotic identification for exposomics.
Liu KH, Lee CM, Singer G, Bais P, Castellanos F, Woodworth MH, Ziegler TR, Kraft CS, Miller GW, Li S, Go YM, Morgan ET, Jones DP. Liu KH, et al. Among authors: jones dp. Nat Commun. 2021 Sep 14;12(1):5418. doi: 10.1038/s41467-021-25698-x. Nat Commun. 2021. PMID: 34521839 Free PMC article.
Predicting network activity from high throughput metabolomics.
Li S, Park Y, Duraisingham S, Strobel FH, Khan N, Soltow QA, Jones DP, Pulendran B. Li S, et al. Among authors: jones dp. PLoS Comput Biol. 2013;9(7):e1003123. doi: 10.1371/journal.pcbi.1003123. Epub 2013 Jul 4. PLoS Comput Biol. 2013. PMID: 23861661 Free PMC article.
Computational Metabolomics: A Framework for the Million Metabolome.
Uppal K, Walker DI, Liu K, Li S, Go YM, Jones DP. Uppal K, et al. Among authors: jones dp. Chem Res Toxicol. 2016 Dec 19;29(12):1956-1975. doi: 10.1021/acs.chemrestox.6b00179. Epub 2016 Oct 12. Chem Res Toxicol. 2016. PMID: 27629808 Free PMC article. Review.
956 results