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409 results

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Page 1
Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network.
Grapotte M, Saraswat M, Bessière C, Menichelli C, Ramilowski JA, Severin J, Hayashizaki Y, Itoh M, Tagami M, Murata M, Kojima-Ishiyama M, Noma S, Noguchi S, Kasukawa T, Hasegawa A, Suzuki H, Nishiyori-Sueki H, Frith MC; FANTOM consortium; Chatelain C, Carninci P, de Hoon MJL, Wasserman WW, Bréhélin L, Lecellier CH. Grapotte M, et al. Among authors: carninci p. Nat Commun. 2021 Jun 2;12(1):3297. doi: 10.1038/s41467-021-23143-7. Nat Commun. 2021. PMID: 34078885 Free PMC article.
Single-cell RNA sequencing of peripheral blood links cell-type-specific regulation of splicing to autoimmune and inflammatory diseases.
Tian C, Zhang Y, Tong Y, Kock KH, Sim DY, Liu F, Dong J, Jing Z, Wang W, Gao J, Tan LM, Han KY, Tomofuji Y, Nakano M, Buyamin EV, Sonthalia R, Ando Y, Hatano H, Sonehara K; Asian Immune Diversity Atlas Network; Jin X, Loh M, Chambers J, Hon CC, Choi M, Park JE, Ishigaki K, Okamura T, Fujio K, Okada Y, Park WY, Shin JW, Roca X, Prabhakar S, Liu B. Tian C, et al. Nat Genet. 2024 Dec;56(12):2739-2752. doi: 10.1038/s41588-024-02019-8. Epub 2024 Dec 3. Nat Genet. 2024. PMID: 39627432 Free PMC article.
Update of the FANTOM web resource: enhancement for studying noncoding genomes.
Nobusada T, Yip CW, Agrawal S, Severin J, Abugessaisa I, Hasegawa A, Hon CC, Ide S, Koido M, Kondo A, Masuya H, Oki S, Tagami M, Takada T, Terao C, Thalhath N, Walker S, Yasuzawa K, Shin JW, de Hoon MJL, Carninci P, Kawaji H, Kasukawa T. Nobusada T, et al. Among authors: carninci p. Nucleic Acids Res. 2025 Jan 6;53(D1):D419-D424. doi: 10.1093/nar/gkae1047. Nucleic Acids Res. 2025. PMID: 39592010 Free PMC article.
The commitment of the human cell atlas to humanity.
Amit I, Ardlie K, Arzuaga F, Awandare G, Bader G, Bernier A, Carninci P, Donnelly S, Eils R, Forrest ARR, Greely HT, Guigo R, Hacohen N, Haniffa M, Kirby ES, Knoppers BM, Kriegstein A, Lein ES, Linnarsson S, Majumder PP, Merad M, Meyer K, Mhlanga MM, Nolan G, Ntusi NAB, Pe'er D, Prabhakar S, Raven-Adams M, Regev A, Rozenblatt-Rosen O, Saha S, Saltzman A, Shalek AK, Shin JW, Stunnenberg H, Teichmann SA, Tickle T, Villani AC, Wells C, Wold B, Yang H, Zhuang X. Amit I, et al. Among authors: carninci p. Nat Commun. 2024 Nov 20;15(1):10019. doi: 10.1038/s41467-024-54306-x. Nat Commun. 2024. PMID: 39567491 Free PMC article. Review.
Widespread 3'UTR capped RNAs derive from G-rich regions in proximity to AGO2 binding sites.
Haberman N, Digby H, Faraway R, Cheung R, Chakrabarti AM, Jobbins AM, Parr C, Yasuzawa K, Kasukawa T, Yip CW, Kato M, Takahashi H, Carninci P, Vernia S, Ule J, Sibley CR, Martinez-Sanchez A, Lenhard B. Haberman N, et al. Among authors: carninci p. BMC Biol. 2024 Nov 7;22(1):254. doi: 10.1186/s12915-024-02032-7. BMC Biol. 2024. PMID: 39511645 Free PMC article.
Biallelic GGGCC repeat expansion leading to NAXE-related mitochondrial encephalopathy.
Ozaki K, Yatsuka Y, Oyazato Y, Nishiyama A, Nitta KR, Kishita Y, Fushimi T, Shimura M, Noma S, Sugiyama Y, Tagami M, Fukunaga M, Kinoshita H, Hirata T, Suda W, Murakawa Y, Carninci P, Ohtake A, Murayama K, Okazaki Y. Ozaki K, et al. Among authors: carninci p. NPJ Genom Med. 2024 Oct 25;9(1):48. doi: 10.1038/s41525-024-00429-5. NPJ Genom Med. 2024. PMID: 39455596 Free PMC article.
The 1% gift to humanity: The Human Genome Project II.
Liu W, Li Y, Patrinos GP, Xu S, Thong MK, Chen Z, Crawley FP, Li L, Ekmekci PE, Drmanac R, Cheong W, Benamouzig R, Nguyen Q, Volchkov P, Reichardt JKV, Carninci P, Majumder P, Jin X, Church G, Wang J, Xu X. Liu W, et al. Among authors: carninci p. Cell Res. 2024 Nov;34(11):747-750. doi: 10.1038/s41422-024-01026-y. Epub 2024 Sep 11. Cell Res. 2024. PMID: 39261573 Free PMC article. No abstract available.
409 results