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Programmable Protein Stabilization with Language Model-Derived Peptide Guides.
Hong L, Ye T, Wang TZ, Srijay D, Zhao L, Watson R, Vincoff S, Chen T, Kholina K, Goel S, DeLisa MP, Chatterjee P. Hong L, et al. Among authors: chen t. Res Sq [Preprint]. 2024 Jul 26:rs.3.rs-4670386. doi: 10.21203/rs.3.rs-4670386/v1. Res Sq. 2024. PMID: 39108486 Free PMC article. Preprint.
SaLT&PepPr is an interface-predicting language model for designing peptide-guided protein degraders.
Brixi G, Ye T, Hong L, Wang T, Monticello C, Lopez-Barbosa N, Vincoff S, Yudistyra V, Zhao L, Haarer E, Chen T, Pertsemlidis S, Palepu K, Bhat S, Christopher J, Li X, Liu T, Zhang S, Petersen L, DeLisa MP, Chatterjee P. Brixi G, et al. Among authors: chen t. Commun Biol. 2023 Oct 24;6(1):1081. doi: 10.1038/s42003-023-05464-z. Commun Biol. 2023. PMID: 37875551 Free PMC article.
De Novo Design of Peptide Binders to Conformationally Diverse Targets with Contrastive Language Modeling.
Bhat S, Palepu K, Hong L, Mao J, Ye T, Iyer R, Zhao L, Chen T, Vincoff S, Watson R, Wang T, Srijay D, Kavirayuni VS, Kholina K, Goel S, Vure P, Desphande AJ, Soderling SH, DeLisa MP, Chatterjee P. Bhat S, et al. Among authors: chen t. bioRxiv [Preprint]. 2024 Jul 22:2023.06.26.546591. doi: 10.1101/2023.06.26.546591. bioRxiv. 2024. PMID: 39091799 Free PMC article. Preprint.
Integration of the rat liver micronucleus assay into a 28-day treatment protocol: testing the genotoxicity of four small-molecule nitrosamines with different carcinogenic potencies and tumor target specificities.
Guo X, Seo JE, Xu H, Yan J, Malhi P, Atrakchi AH, Mcgovern T, Davis Bruno KL, Heflich RH, Chen T. Guo X, et al. Among authors: chen t. Toxicol Sci. 2025 Jan 3:kfaf002. doi: 10.1093/toxsci/kfaf002. Online ahead of print. Toxicol Sci. 2025. PMID: 39752321
R(3780) Resonance Interpreted as the 1^{3}D_{1}-Wave Dominant State of Charmonium from Precise Measurements of the Cross Section of e^{+}e^{-}→Hadrons.
Ablikim M, Achasov MN, Adlarson P, Ai XC, Aliberti R, Amoroso A, An MR, An Q, Bai Y, Bakina O, Balossino I, Ban Y, Batozskaya V, Begzsuren K, Berger N, Berlowski M, Bertani M, Bettoni D, Bianchi F, Bianco E, Bloms J, Bortone A, Boyko I, Briere RA, Brueggemann A, Cai H, Cai X, Calcaterra A, Cao GF, Cao N, Cetin SA, Chang JF, Chang TT, Chang WL, Che GR, Chelkov G, Chen C, Chen C, Chen G, Chen HS, Chen ML, Chen SJ, Chen SM, Chen T, Chen XR, Chen XT, Chen YB, Chen YQ, Chen ZJ, Cheng WS, Choi SK, Chu X, Cibinetto G, Coen SC, Cossio F, Cui JJ, Dai HL, Dai JP, Dbeyssi A, de Boer RE, Dedovich D, Deng ZY, Denig A, Denysenko I, Destefanis M, De Mori F, Ding B, Ding XX, Ding Y, Ding Y, Dong J, Dong LY, Dong MY, Dong X, Du SX, Duan ZH, Egorov P, Fan YL, Fang J, Fang SS, Fang WX, Fang Y, Farinelli R, Fava L, Feldbauer F, Felici G, Feng CQ, Feng JH, Fischer K, Fritsch M, Fritzsch C, Fu CD, Fu JL, Fu Y, Fu YW, Gao H, Gao YN, Gao Y, Garbolino S, Garzia I, Ge PT, Ge ZW, Geng C, Gersabeck EM, Gilman A, Goetzen K, Gong L, Gong WX, Gradl W, Gramigna S, Greco M, Gu MH, Gu YT, Guan CY, Guan ZL, Guo AQ, Guo LB, Guo MJ, Guo RP, Guo YP, Guskov A, H XT, Han TT, Han WY, Hao XQ, Harris FA, He KK, He K… See abstract for full author list ➔ Ablikim M, et al. Among authors: chen t. Phys Rev Lett. 2024 Dec 13;133(24):241902. doi: 10.1103/PhysRevLett.133.241902. Phys Rev Lett. 2024. PMID: 39750337
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