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Page 1
The Ruminant Telomere-to-Telomere (RT2T) Consortium.
Kalbfleisch TS, McKay SD, Murdoch BM, Adelson DL, Almansa-Villa D, Becker G, Beckett LM, Benítez-Galeano MJ, Biase F, Casey T, Chuong E, Clark E, Clarke S, Cockett N, Couldrey C, Davis BW, Elsik CG, Faraut T, Gao Y, Genet C, Grady P, Green J, Green R, Guan D, Hagen D, Hartley GA, Heaton M, Hoyt SJ, Huang W, Jarvis E, Kalleberg J, Khatib H, Koepfi KP, Koltes J, Koren S, Kuehn C, Leeb T, Leonard A, Liu GE, Low WY, McConnell H, McRae K, Miga K, Mousel M, Neibergs H, Olagunju T, Pennell M, Petry B, Pewsner M, Phillippy AM, Pickett BD, Pineda P, Potapova T, Rachagani S, Rhie A, Rijnkels M, Robic A, Rodriguez Osorio N, Safonova Y, Schettini G, Schnabel RD, Sirpu Natesh N, Stegemiller M, Storer J, Stothard P, Stull C, Tosser-Klopp G, Traglia GM, Tuggle CK, Van Tassell CP, Watson C, Weikard R, Wimmers K, Xie S, Yang L, Smith TPL, O'Neill RJ, Rosen BD. Kalbfleisch TS, et al. Among authors: cockett n. Nat Genet. 2024 Aug;56(8):1566-1573. doi: 10.1038/s41588-024-01835-2. Epub 2024 Aug 5. Nat Genet. 2024. PMID: 39103649 Review.
AgAnimalGenomes: browsers for viewing and manually annotating farm animal genomes.
Triant DA, Walsh AT, Hartley GA, Petry B, Stegemiller MR, Nelson BM, McKendrick MM, Fuller EP, Cockett NE, Koltes JE, McKay SD, Green JA, Murdoch BM, Hagen DE, Elsik CG. Triant DA, et al. Among authors: cockett ne. Mamm Genome. 2023 Sep;34(3):418-436. doi: 10.1007/s00335-023-10008-1. Epub 2023 Jul 17. Mamm Genome. 2023. PMID: 37460664 Free PMC article.
The first complete T2T Assemblies of Cattle and Sheep Y-Chromosomes uncover remarkable divergence in structure and gene content.
Smith T, Olagunju T, Rosen B, Neibergs H, Becker G, Davenport K, Elsik C, Hadfield T, Koren S, Kuhn K, Rhie A, Shira K, Skibiel A, Stegemiller M, Thorne J, Villamediana P, Cockett N, Murdoch B. Smith T, et al. Among authors: cockett n. Res Sq [Preprint]. 2024 Apr 3:rs.3.rs-4033388. doi: 10.21203/rs.3.rs-4033388/v1. Res Sq. 2024. Update in: Nat Commun. 2024 Sep 27;15(1):8277. doi: 10.1038/s41467-024-52384-5 PMID: 38712074 Free PMC article. Updated. Preprint.
Genome-wide association with footrot in hair and wool sheep.
Cinar MU, Oliveira RD, Hadfield TS, Lichtenwalner A, Brzozowski RJ, Settlemire CT, Schoenian SG, Parker C, Neibergs HL, Cockett NE, White SN. Cinar MU, et al. Among authors: cockett ne. Front Genet. 2024 Jan 15;14:1297444. doi: 10.3389/fgene.2023.1297444. eCollection 2023. Front Genet. 2024. PMID: 38288162 Free PMC article.
Telomere-to-telomere assemblies of cattle and sheep Y-chromosomes uncover divergent structure and gene content.
Olagunju TA, Rosen BD, Neibergs HL, Becker GM, Davenport KM, Elsik CG, Hadfield TS, Koren S, Kuhn KL, Rhie A, Shira KA, Skibiel AL, Stegemiller MR, Thorne JW, Villamediana P, Cockett NE, Murdoch BM, Smith TPL. Olagunju TA, et al. Among authors: cockett ne. Nat Commun. 2024 Sep 27;15(1):8277. doi: 10.1038/s41467-024-52384-5. Nat Commun. 2024. PMID: 39333471 Free PMC article.
Characterizing Genetic Regulatory Elements in Ovine Tissues.
Davenport KM, Massa AT, Bhattarai S, McKay SD, Mousel MR, Herndon MK, White SN, Cockett NE, Smith TPL, Murdoch BM; Ovine FAANG Project Consortium. Davenport KM, et al. Among authors: cockett ne. Front Genet. 2021 May 20;12:628849. doi: 10.3389/fgene.2021.628849. eCollection 2021. Front Genet. 2021. PMID: 34093640 Free PMC article.
Analysis of Polycerate Mutants Reveals the Evolutionary Co-option of HOXD1 for Horn Patterning in Bovidae.
Allais-Bonnet A, Hintermann A, Deloche MC, Cornette R, Bardou P, Naval-Sanchez M, Pinton A, Haruda A, Grohs C, Zakany J, Bigi D, Medugorac I, Putelat O, Greyvenstein O, Hadfield T, Jemaa SB, Bunevski G, Menzi F, Hirter N, Paris JM, Hedges J, Palhiere I, Rupp R, Lenstra JA, Gidney L, Lesur J, Schafberg R, Stache M, Wandhammer MD, Arbogast RM, Guintard C, Blin A, Boukadiri A, Rivière J, Esquerré D, Donnadieu C, Danchin-Burge C, Reich CM, Riley DG, Marle-Koster EV, Cockett N, Hayes BJ, Drögemüller C, Kijas J, Pailhoux E, Tosser-Klopp G, Duboule D, Capitan A. Allais-Bonnet A, et al. Among authors: cockett n. Mol Biol Evol. 2021 May 19;38(6):2260-2272. doi: 10.1093/molbev/msab021. Mol Biol Evol. 2021. PMID: 33528505 Free PMC article.
95 results