Pinto G - Search Results

1

A computational workflow for analysis of missense mutations in precision oncology.

Khan RT, Pokorna P, Stourac J, Borko S, Arefiev I, Planas-Iglesias J, Dobias A, Pinto G, Szotkowska V, Sterba J, Slaby O, Damborsky J, Mazurenko S, Bednar D. Khan RT, et al. Among authors: pinto g. J Cheminform. 2024 Jul 29;16(1):86. doi: 10.1186/s13321-024-00876-3. J Cheminform. 2024. PMID: 39075588 Free PMC article.

2

Engineering enzyme access tunnels.

Kokkonen P, Bednar D, Pinto G, Prokop Z, Damborsky J. Kokkonen P, et al. Among authors: pinto g. Biotechnol Adv. 2019 Nov 1;37(6):107386. doi: 10.1016/j.biotechadv.2019.04.008. Epub 2019 Apr 23. Biotechnol Adv. 2019. PMID: 31026496 Free article. Review.

3

Caver Web 1.0: identification of tunnels and channels in proteins and analysis of ligand transport.

Stourac J, Vavra O, Kokkonen P, Filipovic J, Pinto G, Brezovsky J, Damborsky J, Bednar D. Stourac J, et al. Among authors: pinto g. Nucleic Acids Res. 2019 Jul 2;47(W1):W414-W422. doi: 10.1093/nar/gkz378. Nucleic Acids Res. 2019. PMID: 31114897 Free PMC article.

4

Fast Screening of Inhibitor Binding/Unbinding Using Novel Software Tool CaverDock.

Pinto GP, Vavra O, Filipovic J, Stourac J, Bednar D, Damborsky J. Pinto GP, et al. Front Chem. 2019 Oct 29;7:709. doi: 10.3389/fchem.2019.00709. eCollection 2019. Front Chem. 2019. PMID: 31737596 Free PMC article.

5

The impact of tunnel mutations on enzymatic catalysis depends on the tunnel-substrate complementarity and the rate-limiting step.

Kokkonen P, Slanska M, Dockalova V, Pinto GP, Sánchez-Carnerero EM, Damborsky J, Klán P, Prokop Z, Bednar D. Kokkonen P, et al. Comput Struct Biotechnol J. 2020 Mar 25;18:805-813. doi: 10.1016/j.csbj.2020.03.017. eCollection 2020. Comput Struct Biotechnol J. 2020. PMID: 32308927 Free PMC article.

6

Computational design of enzymes for biotechnological applications.

Planas-Iglesias J, Marques SM, Pinto GP, Musil M, Stourac J, Damborsky J, Bednar D. Planas-Iglesias J, et al. Biotechnol Adv. 2021 Mar-Apr;47:107696. doi: 10.1016/j.biotechadv.2021.107696. Epub 2021 Jan 26. Biotechnol Adv. 2021. PMID: 33513434 Review.

7

Screening of world approved drugs against highly dynamical spike glycoprotein of SARS-CoV-2 using CaverDock and machine learning.

Pinto GP, Vavra O, Marques SM, Filipovic J, Bednar D, Damborsky J. Pinto GP, et al. Comput Struct Biotechnol J. 2021;19:3187-3197. doi: 10.1016/j.csbj.2021.05.043. Epub 2021 May 26. Comput Struct Biotechnol J. 2021. PMID: 34104357 Free PMC article.

8

Engineering the protein dynamics of an ancestral luciferase.

Schenkmayerova A, Pinto GP, Toul M, Marek M, Hernychova L, Planas-Iglesias J, Daniel Liskova V, Pluskal D, Vasina M, Emond S, Dörr M, Chaloupkova R, Bednar D, Prokop Z, Hollfelder F, Bornscheuer UT, Damborsky J. Schenkmayerova A, et al. Nat Commun. 2021 Jun 14;12(1):3616. doi: 10.1038/s41467-021-23450-z. Nat Commun. 2021. PMID: 34127663 Free PMC article.

9

Virtual screening of potential anticancer drugs based on microbial products.

Pinto GP, Hendrikse NM, Stourac J, Damborsky J, Bednar D. Pinto GP, et al. Semin Cancer Biol. 2022 Nov;86(Pt 2):1207-1217. doi: 10.1016/j.semcancer.2021.07.012. Epub 2021 Jul 21. Semin Cancer Biol. 2022. PMID: 34298109 Review.

10

LoopGrafter: Visual Support for the Grafting Workflow of Protein Loops.

Opaleny F, Ulbrich P, Planas-Iglesias J, Byska J, Pinto GP, Bednar D, FurmanovA K, KozlikovA B. Opaleny F, et al. IEEE Trans Vis Comput Graph. 2021 Sep 29;PP. doi: 10.1109/TVCG.2021.3114755. Online ahead of print. IEEE Trans Vis Comput Graph. 2021. PMID: 34587016

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