Levy A - Search Results

1

Identification of novel toxins associated with the extracellular contractile injection system using machine learning.

Danov A, Pollin I, Moon E, Ho M, Wilson BA, Papathanos PA, Kaplan T, Levy A. Danov A, et al. Among authors: levy a. Mol Syst Biol. 2024 Aug;20(8):859-879. doi: 10.1038/s44320-024-00053-6. Epub 2024 Jul 28. Mol Syst Biol. 2024. PMID: 39069594 Free PMC article.

2

The extracellular contractile injection system is enriched in environmental microbes and associates with numerous toxins.

Geller AM, Pollin I, Zlotkin D, Danov A, Nachmias N, Andreopoulos WB, Shemesh K, Levy A. Geller AM, et al. Among authors: levy a. Nat Commun. 2021 Jun 18;12(1):3743. doi: 10.1038/s41467-021-23777-7. Nat Commun. 2021. PMID: 34145238 Free PMC article.

3

Toxinome-the bacterial protein toxin database.

Danov A, Segev O, Bograd A, Ben Eliyahu Y, Dotan N, Kaplan T, Levy A. Danov A, et al. Among authors: levy a. mBio. 2024 Jan 16;15(1):e0191123. doi: 10.1128/mbio.01911-23. Epub 2023 Dec 20. mBio. 2024. PMID: 38117054 Free PMC article.

4

Identification of type VI secretion system effector-immunity pairs using structural bioinformatics.

Geller AM, Shalom M, Zlotkin D, Blum N, Levy A. Geller AM, et al. Among authors: levy a. Mol Syst Biol. 2024 Jun;20(6):702-718. doi: 10.1038/s44320-024-00035-8. Epub 2024 Apr 24. Mol Syst Biol. 2024. PMID: 38658795 Free PMC article.

5

Systematic discovery of antibacterial and antifungal bacterial toxins.

Nachmias N, Dotan N, Rocha MC, Fraenkel R, Detert K, Kluzek M, Shalom M, Cheskis S, Peedikayil-Kurien S, Meitav G, Rivitz A, Shamash-Halevy N, Cahana I, Deouell N, Klein J, Oren-Suissa M, Schmidt H, Schlezinger N, Tzarum N, Oppenheimer-Shaanan Y, Levy A. Nachmias N, et al. Among authors: levy a. Nat Microbiol. 2024 Nov;9(11):3041-3058. doi: 10.1038/s41564-024-01820-9. Epub 2024 Oct 22. Nat Microbiol. 2024. PMID: 39438720

6

Deciphering bacterial protein functions with innovative computational methods.

Cheskis S, Akerman A, Levy A. Cheskis S, et al. Among authors: levy a. Trends Microbiol. 2024 Dec 29:S0966-842X(24)00316-0. doi: 10.1016/j.tim.2024.11.013. Online ahead of print. Trends Microbiol. 2024. PMID: 39736484 Review.

7

Deeplasmid: deep learning accurately separates plasmids from bacterial chromosomes.

Andreopoulos WB, Geller AM, Lucke M, Balewski J, Clum A, Ivanova NN, Levy A. Andreopoulos WB, et al. Among authors: levy a. Nucleic Acids Res. 2022 Feb 22;50(3):e17. doi: 10.1093/nar/gkab1115. Nucleic Acids Res. 2022. PMID: 34871418 Free PMC article.

8

The Role of Secretion Systems, Effectors, and Secondary Metabolites of Beneficial Rhizobacteria in Interactions With Plants and Microbes.

Lucke M, Correa MG, Levy A. Lucke M, et al. Among authors: levy a. Front Plant Sci. 2020 Nov 9;11:589416. doi: 10.3389/fpls.2020.589416. eCollection 2020. Front Plant Sci. 2020. PMID: 33240304 Free PMC article. Review.

9

Cell-Cell Signaling Proteobacterial LuxR Solos: a Treasure Trove of Subgroups Having Different Origins, Ligands, and Ecological Roles.

Bez C, Geller AM, Levy A, Venturi V. Bez C, et al. Among authors: levy a. mSystems. 2023 Apr 27;8(2):e0103922. doi: 10.1128/msystems.01039-22. Epub 2023 Feb 21. mSystems. 2023. PMID: 36802056 Free PMC article. Review.

10

Comparative genomic analysis reveals differential genomic characteristics and featured genes between rapid- and slow-growing non-tuberculous mycobacteria.

Zhang M, Wang P, Li C, Segev O, Wang J, Wang X, Yue L, Jiang X, Sheng Y, Levy A, Jiang C, Chen F. Zhang M, et al. Among authors: levy a. Front Microbiol. 2023 Sep 21;14:1243371. doi: 10.3389/fmicb.2023.1243371. eCollection 2023. Front Microbiol. 2023. PMID: 37808319 Free PMC article.

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