Sobkowiak B - Search Results

1

Tiled Amplicon Sequencing Enables Culture-free Whole-Genome Sequencing of Pathogenic Bacteria From Clinical Specimens.

Kalinich CC, Gonzalez FL, Osmaston A, Breban MI, Distefano I, Leon C, Sheen P, Zimic M, Coronel J, Tan G, Crudu V, Ciobanu N, Codreanu A, Solano W, Ráez J, Allicock OM, Chaguza C, Wyllie AL, Brandt M, Weinberger DM, Sobkowiak B, Cohen T, Grandjean L, Grubaugh ND, Redmond SN. Kalinich CC, et al. Among authors: sobkowiak b. bioRxiv [Preprint]. 2024 Dec 20:2024.12.19.629550. doi: 10.1101/2024.12.19.629550. bioRxiv. 2024. PMID: 39763738 Free PMC article. Preprint.

2

TGV: suite of tools to visualize transmission graphs.

Phelan JE, Niazi F, Wang L, Ngwana-Joseph GC, Sobkowiak B, Cohen T, Campino S, Clark TG. Phelan JE, et al. Among authors: sobkowiak b. NAR Genom Bioinform. 2024 Dec 5;6(4):lqae158. doi: 10.1093/nargab/lqae158. eCollection 2024 Dec. NAR Genom Bioinform. 2024. PMID: 39660255 Free PMC article.

3

Signatures of transmission in within-host Mycobacterium tuberculosis complex variation: a retrospective genomic epidemiology study.

Walter KS, Cohen T, Mathema B, Colijn C, Sobkowiak B, Comas I, Goig GA, Croda J, Andrews JR. Walter KS, et al. Among authors: sobkowiak b. Lancet Microbe. 2024 Nov 27:100936. doi: 10.1016/j.lanmic.2024.06.003. Online ahead of print. Lancet Microbe. 2024. PMID: 39615498 Free article.

4

Early prediction of Mycobacterium tuberculosis transmission clusters using supervised learning models.

Gharamaleki OG, Colijn C, Sekirov I, Johnston JC, Sobkowiak B. Gharamaleki OG, et al. Among authors: sobkowiak b. Sci Rep. 2024 Nov 12;14(1):27652. doi: 10.1038/s41598-024-78247-z. Sci Rep. 2024. PMID: 39532933 Free PMC article.

5

Author Correction: The recent rapid expansion of multidrug resistant Ural lineage Mycobacterium tuberculosis in Moldova.

Chitwood MH, Colijn C, Yang C, Crudu V, Ciobanu N, Codreanu A, Kim J, Rancu I, Rhee K, Cohen T, Sobkowiak B. Chitwood MH, et al. Among authors: sobkowiak b. Nat Commun. 2024 Oct 29;15(1):9332. doi: 10.1038/s41467-024-53809-x. Nat Commun. 2024. PMID: 39472436 Free PMC article. No abstract available.

6

Phylogeographic Analysis of Mycobacterium kansasii Isolates from Patients with M. kansasii Lung Disease in Industrialized City, Taiwan.

Tobias Cudahy PG, Liu PC, Warren JL, Sobkowiak B, Yang C, Ioerger TR, Wu CY, Lu PL, Wang JY, Chang HH, Huang HL, Cohen T, Lin HH. Tobias Cudahy PG, et al. Among authors: sobkowiak b. Emerg Infect Dis. 2024 Aug;30(8):1562-1570. doi: 10.3201/eid3008.240021. Emerg Infect Dis. 2024. PMID: 39043390 Free PMC article.

7

e3SIM: epidemiological-ecological-evolutionary simulation framework for genomic epidemiology.

Xu P, Liang S, Hahn A, Zhao V, Lo WT', Haller BC, Sobkowiak B, Chitwood MH, Colijn C, Cohen T, Rhee KY, Messer PW, Wells MT, Clark AG, Kim J. Xu P, et al. Among authors: sobkowiak b. bioRxiv [Preprint]. 2024 Jul 2:2024.06.29.601123. doi: 10.1101/2024.06.29.601123. bioRxiv. 2024. PMID: 39005464 Free PMC article. Preprint.

8

Corrigendum to-"Identifying local foci of tuberculosis transmission in Moldova using a spatial multinomial logistic regression model" [eBioMedicine 102(2024) 105085].

Lan Y, Crudu V, Ciobanu N, Codreanu A, Chitwood MH, Sobkowiak B, Warren JL, Cohen T. Lan Y, et al. Among authors: sobkowiak b. EBioMedicine. 2024 Jul;105:105225. doi: 10.1016/j.ebiom.2024.105225. Epub 2024 Jun 28. EBioMedicine. 2024. PMID: 38943727 Free PMC article. No abstract available.

9

Phylogenetic inference of pneumococcal transmission from cross-sectional data, a pilot study.

Hackman J, Sheppard C, Phelan J, Jones-Warner W, Sobkowiak B, Shah S, Litt D, Fry NK, Toizumi M, Yoshida LM, Hibberd M, Miller E, Flasche S, Hué S. Hackman J, et al. Among authors: sobkowiak b. Wellcome Open Res. 2023 Oct 6;8:427. doi: 10.12688/wellcomeopenres.19219.1. eCollection 2023. Wellcome Open Res. 2023. PMID: 38638914 Free PMC article.

10

The recent rapid expansion of multidrug resistant Ural lineage Mycobacterium tuberculosis in Moldova.

Chitwood MH, Colijn C, Yang C, Crudu V, Ciobanu N, Codreanu A, Kim J, Rancu I, Rhee K, Cohen T, Sobkowiak B. Chitwood MH, et al. Among authors: sobkowiak b. Nat Commun. 2024 Apr 5;15(1):2962. doi: 10.1038/s41467-024-47282-9. Nat Commun. 2024. PMID: 38580642 Free PMC article.

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