Aoki ST - Search Results

1

A primer for junior trainees: Recognition of RNA modifications by RNA-binding proteins.

Angelo M, Bhargava Y, Aoki ST. Angelo M, et al. Among authors: aoki st. Biochem Mol Biol Educ. 2024 Nov-Dec;52(6):701-710. doi: 10.1002/bmb.21854. Epub 2024 Jul 22. Biochem Mol Biol Educ. 2024. PMID: 39037148 Review.

2

In silico λ-dynamics predicts protein binding specificities to modified RNAs.

Angelo M, Zhang W, Vilseck JZ, Aoki ST. Angelo M, et al. Among authors: aoki st. bioRxiv [Preprint]. 2024 Jan 27:2024.01.26.577511. doi: 10.1101/2024.01.26.577511. bioRxiv. 2024. PMID: 38328125 Free PMC article. Preprint.

3

An effective Caenorhabditis elegans CRISPR training module for high school and undergraduate summer research experiences in molecular biology.

Herrera Sandoval C, Borchers C, Aoki ST. Herrera Sandoval C, et al. Among authors: aoki st. Biochem Mol Biol Educ. 2024 Nov-Dec;52(6):656-665. doi: 10.1002/bmb.21856. Epub 2024 Jul 27. Biochem Mol Biol Educ. 2024. PMID: 39072870

4

Accurate in silico predictions of modified RNA interactions to a prototypical RNA-binding protein with λ-dynamics.

Angelo M, Bhargava Y, Kierzek E, Kierzek R, Hayes RL, Zhang W, Vilseck JZ, Aoki ST. Angelo M, et al. Among authors: aoki st. bioRxiv [Preprint]. 2024 Dec 11:2024.12.10.627848. doi: 10.1101/2024.12.10.627848. bioRxiv. 2024. PMID: 39713306 Free PMC article. Preprint.

5

An improved in vivo tethering assay with single molecule FISH reveals that a nematode Nanos enhances reporter expression and mRNA stability.

Doenier J, Lynch TR, Kimble J, Aoki ST. Doenier J, et al. Among authors: aoki st. RNA. 2021 Jun;27(6):643-652. doi: 10.1261/rna.078693.121. Epub 2021 Mar 16. RNA. 2021. PMID: 33727224 Free PMC article.

6

C. elegans germ granules require both assembly and localized regulators for mRNA repression.

Aoki ST, Lynch TR, Crittenden SL, Bingman CA, Wickens M, Kimble J. Aoki ST, et al. Nat Commun. 2021 Feb 12;12(1):996. doi: 10.1038/s41467-021-21278-1. Nat Commun. 2021. PMID: 33579952 Free PMC article.

7

An RNA-Binding Multimer Specifies Nematode Sperm Fate.

Aoki ST, Porter DF, Prasad A, Wickens M, Bingman CA, Kimble J. Aoki ST, et al. Cell Rep. 2018 Jun 26;23(13):3769-3775. doi: 10.1016/j.celrep.2018.05.095. Cell Rep. 2018. PMID: 29949762 Free PMC article.

8

PGL germ granule assembly protein is a base-specific, single-stranded RNase.

Aoki ST, Kershner AM, Bingman CA, Wickens M, Kimble J. Aoki ST, et al. Proc Natl Acad Sci U S A. 2016 Feb 2;113(5):1279-84. doi: 10.1073/pnas.1524400113. Epub 2016 Jan 19. Proc Natl Acad Sci U S A. 2016. PMID: 26787882 Free PMC article.

9

Genomic Analyses of Sperm Fate Regulator Targets Reveal a Common Set of Oogenic mRNAs in Caenorhabditis elegans.

Noble DC, Aoki ST, Ortiz MA, Kim KW, Verheyden JM, Kimble J. Noble DC, et al. Among authors: aoki st. Genetics. 2016 Jan;202(1):221-34. doi: 10.1534/genetics.115.182592. Epub 2015 Nov 12. Genetics. 2016. PMID: 26564160 Free PMC article.

10

Variation of human immunodeficiency virus type-1 reverse transcriptase within the simian immunodeficiency virus genome of RT-SHIV.

Wadford DA, Kauffman RC, Deere JD, Aoki ST, Stanton RA, Higgins J, Van Rompay KK, Villalobos A, Nettles JH, Schinazi RF, Pedersen NC, North TW. Wadford DA, et al. Among authors: aoki st. PLoS One. 2014 Jan 31;9(1):e86997. doi: 10.1371/journal.pone.0086997. eCollection 2014. PLoS One. 2014. PMID: 24498008 Free PMC article.

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