Cuperus JT - Search Results

1

The regulatory potential of transposable elements in maize.

Bubb KL, Hamm MO, Min JK, Ramirez-Corona B, Mueth NA, Ranchalis J, Vollger MR, Trapnell C, Cuperus JT, Queitsch C, Stergachis AB. Bubb KL, et al. Among authors: cuperus jt. bioRxiv [Preprint]. 2024 Jul 14:2024.07.10.602892. doi: 10.1101/2024.07.10.602892. bioRxiv. 2024. PMID: 39026747 Free PMC article. Preprint.

2

Identification of MIR390a precursor processing-defective mutants in Arabidopsis by direct genome sequencing.

Cuperus JT, Montgomery TA, Fahlgren N, Burke RT, Townsend T, Sullivan CM, Carrington JC. Cuperus JT, et al. Proc Natl Acad Sci U S A. 2010 Jan 5;107(1):466-71. doi: 10.1073/pnas.0913203107. Epub 2009 Dec 14. Proc Natl Acad Sci U S A. 2010. PMID: 20018656 Free PMC article.

3

Phytophthora have distinct endogenous small RNA populations that include short interfering and microRNAs.

Fahlgren N, Bollmann SR, Kasschau KD, Cuperus JT, Press CM, Sullivan CM, Chapman EJ, Hoyer JS, Gilbert KB, Grünwald NJ, Carrington JC. Fahlgren N, et al. Among authors: cuperus jt. PLoS One. 2013 Oct 21;8(10):e77181. doi: 10.1371/journal.pone.0077181. eCollection 2013. PLoS One. 2013. PMID: 24204767 Free PMC article.

4

Functional analysis of three Arabidopsis ARGONAUTES using slicer-defective mutants.

Carbonell A, Fahlgren N, Garcia-Ruiz H, Gilbert KB, Montgomery TA, Nguyen T, Cuperus JT, Carrington JC. Carbonell A, et al. Among authors: cuperus jt. Plant Cell. 2012 Sep;24(9):3613-29. doi: 10.1105/tpc.112.099945. Epub 2012 Sep 28. Plant Cell. 2012. PMID: 23023169 Free PMC article.

5

Single-cell genomics in plants: current state, future directions, and hurdles to overcome.

Cuperus JT. Cuperus JT. Plant Physiol. 2022 Feb 4;188(2):749-755. doi: 10.1093/plphys/kiab478. Plant Physiol. 2022. PMID: 34662424 Free PMC article.

6

A tetO Toolkit To Alter Expression of Genes in Saccharomyces cerevisiae.

Cuperus JT, Lo RS, Shumaker L, Proctor J, Fields S. Cuperus JT, et al. ACS Synth Biol. 2015 Jul 17;4(7):842-52. doi: 10.1021/sb500363y. Epub 2015 Mar 17. ACS Synth Biol. 2015. PMID: 25742460 Free PMC article.

7

Effects of sequence motifs in the yeast 3' untranslated region determined from massively parallel assays of random sequences.

Savinov A, Brandsen BM, Angell BE, Cuperus JT, Fields S. Savinov A, et al. Among authors: cuperus jt. Genome Biol. 2021 Oct 18;22(1):293. doi: 10.1186/s13059-021-02509-6. Genome Biol. 2021. PMID: 34663436 Free PMC article.

8

Translation start sequences affect the efficiency of silencing of Agrobacterium tumefaciens T-DNA oncogenes.

Lee H, Humann JL, Pitrak JS, Cuperus JT, Parks TD, Whistler CA, Mok MC, Ream LW. Lee H, et al. Among authors: cuperus jt. Plant Physiol. 2003 Nov;133(3):966-77. doi: 10.1104/pp.103.026534. Epub 2003 Sep 4. Plant Physiol. 2003. PMID: 12972655 Free PMC article.

9

Dynamics of Gene Expression in Single Root Cells of Arabidopsis thaliana.

Jean-Baptiste K, McFaline-Figueroa JL, Alexandre CM, Dorrity MW, Saunders L, Bubb KL, Trapnell C, Fields S, Queitsch C, Cuperus JT. Jean-Baptiste K, et al. Among authors: cuperus jt. Plant Cell. 2019 May;31(5):993-1011. doi: 10.1105/tpc.18.00785. Epub 2019 Mar 28. Plant Cell. 2019. PMID: 30923229 Free PMC article.

10

The promise of single-cell genomics in plants.

McFaline-Figueroa JL, Trapnell C, Cuperus JT. McFaline-Figueroa JL, et al. Among authors: cuperus jt. Curr Opin Plant Biol. 2020 Apr;54:114-121. doi: 10.1016/j.pbi.2020.04.002. Epub 2020 May 5. Curr Opin Plant Biol. 2020. PMID: 32388018 Free PMC article. Review.

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