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A community effort to track commercial single-cell and spatial 'omic technologies and business trends.
De Jonghe J, Opzoomer JW, Vilas-Zornoza A, Crane P, Nilges BS, Vicari M, Lee H, Lara-Astiaso D, Gross T, Morf J, Schneider K, Cudini J, Ramos-Mucci L, Mooijman D, Tiklová K, Salas SM, Langseth CM, Kashikar ND, Roberts CES; scTrends Consortium; Lundeberg J, Nilsson M, Shalek AK, Cribbs AP, Taylor-King JP. De Jonghe J, et al. Nat Biotechnol. 2024 Jul;42(7):1017-1023. doi: 10.1038/s41587-024-02305-0. Nat Biotechnol. 2024. PMID: 39020213 No abstract available.
scTrends: A living review of commercial single-cell and spatial 'omic technologies.
De Jonghe J, Opzoomer JW, Vilas-Zornoza A, Nilges BS, Crane P, Vicari M, Lee H, Lara-Astiaso D, Gross T, Morf J, Schneider K, Cudini J, Ramos-Mucci L, Mooijman D, Tiklová K, Salas SM, Langseth CM, Kashikar ND; scTrends Consortium; Schapiro D, Lundeberg J, Nilsson M, Shalek AK, Cribbs AP, Taylor-King JP. De Jonghe J, et al. Cell Genom. 2024 Dec 11;4(12):100723. doi: 10.1016/j.xgen.2024.100723. Cell Genom. 2024. PMID: 39667347 Free PMC article. Review.
High-throughput total RNA sequencing in single cells using VASA-seq.
Salmen F, De Jonghe J, Kaminski TS, Alemany A, Parada GE, Verity-Legg J, Yanagida A, Kohler TN, Battich N, van den Brekel F, Ellermann AL, Arias AM, Nichols J, Hemberg M, Hollfelder F, van Oudenaarden A. Salmen F, et al. Among authors: de jonghe j. Nat Biotechnol. 2022 Dec;40(12):1780-1793. doi: 10.1038/s41587-022-01361-8. Epub 2022 Jun 27. Nat Biotechnol. 2022. PMID: 35760914 Free PMC article.
Embryo model completes gastrulation to neurulation and organogenesis.
Amadei G, Handford CE, Qiu C, De Jonghe J, Greenfeld H, Tran M, Martin BK, Chen DY, Aguilera-Castrejon A, Hanna JH, Elowitz MB, Hollfelder F, Shendure J, Glover DM, Zernicka-Goetz M. Amadei G, et al. Among authors: de jonghe j. Nature. 2022 Oct;610(7930):143-153. doi: 10.1038/s41586-022-05246-3. Epub 2022 Aug 25. Nature. 2022. PMID: 36007540 Free PMC article.
Saturation genome editing maps the functional spectrum of pathogenic VHL alleles.
Buckley M, Terwagne C, Ganner A, Cubitt L, Brewer R, Kim DK, Kajba CM, Forrester N, Dace P, De Jonghe J, Shepherd STC, Sawyer C, McEwen M, Diederichs S, Neumann-Haefelin E, Turajlic S, Ivakine EA, Findlay GM. Buckley M, et al. Among authors: de jonghe j. Nat Genet. 2024 Jul;56(7):1446-1455. doi: 10.1038/s41588-024-01800-z. Epub 2024 Jul 5. Nat Genet. 2024. PMID: 38969834 Free PMC article.
Plakoglobin is a mechanoresponsive regulator of naive pluripotency.
Kohler TN, De Jonghe J, Ellermann AL, Yanagida A, Herger M, Slatery EM, Weberling A, Munger C, Fischer K, Mulas C, Winkel A, Ross C, Bergmann S, Franze K, Chalut K, Nichols J, Boroviak TE, Hollfelder F. Kohler TN, et al. Among authors: de jonghe j. Nat Commun. 2023 Jul 7;14(1):4022. doi: 10.1038/s41467-023-39515-0. Nat Commun. 2023. PMID: 37419903 Free PMC article.
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