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Page 1
A genome resource for the marine annelid Platynereis dumerilii.
Mutemi KN, Simakov O, Pan L, Santangeli L, Null R, Handberg-Thorsager M, Vellutini BC, Peterson KJ, Fromm B, Larsson T, Savage E, Lopez MO, Hercog R, Provaznik J, Ordoñez-Rueda D, Azevedo N, Gazave E, Vervoort M, Tomancak P, Tan W, Winkler S, Benes V, Hui J, Helm C, Özpolat BD, Arendt D. Mutemi KN, et al. Among authors: savage e. bioRxiv [Preprint]. 2024 Nov 11:2024.06.21.600153. doi: 10.1101/2024.06.21.600153. bioRxiv. 2024. PMID: 38948846 Free PMC article. Preprint.
Whole-body integration of gene expression and single-cell morphology.
Vergara HM, Pape C, Meechan KI, Zinchenko V, Genoud C, Wanner AA, Mutemi KN, Titze B, Templin RM, Bertucci PY, Simakov O, Dürichen W, Machado P, Savage EL, Schermelleh L, Schwab Y, Friedrich RW, Kreshuk A, Tischer C, Arendt D. Vergara HM, et al. Cell. 2021 Sep 2;184(18):4819-4837.e22. doi: 10.1016/j.cell.2021.07.017. Epub 2021 Aug 10. Cell. 2021. PMID: 34380046 Free PMC article.
Phylogenomic insights into the taxonomy, ecology, and mating systems of the lorchel family Discinaceae (Pezizales, Ascomycota).
Dirks AC, Methven AS, Miller AN, Orozco-Quime M, Maurice S, Bonito G, Van Wyk J, Ahrendt S, Kuo A, Andreopoulos W, Riley R, Lipzen A, Chovatia M, Savage E, Barry K, Grigoriev IV, Bradshaw AJ, Martin FM, Elizabeth Arnold A, James TY. Dirks AC, et al. Among authors: savage e. Mol Phylogenet Evol. 2025 Jan 7:108286. doi: 10.1016/j.ympev.2025.108286. Online ahead of print. Mol Phylogenet Evol. 2025. PMID: 39788220
Transcriptomics reveal a mechanism of niche defense: two beneficial root endophytes deploy an antimicrobial GH18-CBM5 chitinase to protect their hosts.
Eichfeld R, Mahdi LK, De Quattro C, Armbruster L, Endeshaw AB, Miyauchi S, Hellmann MJ, Cord-Landwehr S, Peterson D, Singan V, Lail K, Savage E, Ng V, Grigoriev IV, Langen G, Moerschbacher BM, Zuccaro A. Eichfeld R, et al. Among authors: savage e. New Phytol. 2024 Nov;244(3):980-996. doi: 10.1111/nph.20080. Epub 2024 Sep 3. New Phytol. 2024. PMID: 39224928 Free article.
Extreme overall mushroom genome expansion in Mycena s.s. irrespective of plant hosts or substrate specializations.
Harder CB, Miyauchi S, Virágh M, Kuo A, Thoen E, Andreopoulos B, Lu D, Skrede I, Drula E, Henrissat B, Morin E, Kohler A, Barry K, LaButti K, Salamov A, Lipzen A, Merényi Z, Hegedüs B, Baldrian P, Stursova M, Weitz H, Taylor A, Koriabine M, Savage E, Grigoriev IV, Nagy LG, Martin F, Kauserud H. Harder CB, et al. Among authors: savage e. Cell Genom. 2024 Jul 10;4(7):100586. doi: 10.1016/j.xgen.2024.100586. Epub 2024 Jun 27. Cell Genom. 2024. PMID: 38942024 Free PMC article.
Molecular adaptations in response to exercise training are associated with tissue-specific transcriptomic and epigenomic signatures.
Nair VD, Pincas H, Smith GR, Zaslavsky E, Ge Y, Amper MAS, Vasoya M, Chikina M, Sun Y, Raja AN, Mao W, Gay NR, Esser KA, Smith KS, Zhao B, Wiel L, Singh A, Lindholm ME, Amar D, Montgomery S, Snyder MP, Walsh MJ, Sealfon SC; MoTrPAC Study Group. Nair VD, et al. Cell Genom. 2024 Jun 12;4(6):100421. doi: 10.1016/j.xgen.2023.100421. Epub 2024 May 1. Cell Genom. 2024. PMID: 38697122 Free PMC article.
364 results