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Page 1
Detecting co-selection through excess linkage disequilibrium in bacterial genomes.
Mallawaarachchi S, Tonkin-Hill G, Pöntinen AK, Calland JK, Gladstone RA, Arredondo-Alonso S, MacAlasdair N, Thorpe HA, Top J, Sheppard SK, Balding D, Croucher NJ, Corander J. Mallawaarachchi S, et al. Among authors: sheppard sk. NAR Genom Bioinform. 2024 Jun 6;6(2):lqae061. doi: 10.1093/nargab/lqae061. eCollection 2024 Jun. NAR Genom Bioinform. 2024. PMID: 38846349 Free PMC article.
Genomic tailoring of autogenous poultry vaccines to reduce Campylobacter from farm to fork.
Calland JK, Pesonen ME, Mehat J, Pascoe B, Haydon DJ, Lourenco J, Lukasiewicz B, Mourkas E, Hitchings MD, La Ragione RM, Hammond P, Wallis TS, Corander J, Sheppard SK. Calland JK, et al. Among authors: sheppard sk. NPJ Vaccines. 2024 Jun 12;9(1):105. doi: 10.1038/s41541-024-00879-z. NPJ Vaccines. 2024. PMID: 38866805 Free PMC article.
Machine learning to attribute the source of Campylobacter infections in the United States: A retrospective analysis of national surveillance data.
Pascoe B, Futcher G, Pensar J, Bayliss SC, Mourkas E, Calland JK, Hitchings MD, Joseph LA, Lane CG, Greenlee T, Arning N, Wilson DJ, Jolley KA, Corander J, Maiden MCJ, Parker CT, Cooper KK, Rose EB, Hiett K, Bruce BB, Sheppard SK. Pascoe B, et al. Among authors: sheppard sk. J Infect. 2024 Nov;89(5):106265. doi: 10.1016/j.jinf.2024.106265. Epub 2024 Sep 7. J Infect. 2024. PMID: 39245152 Free article.
Author Correction: Repeated out-of-Africa expansions of Helicobacter pylori driven by replacement of deleterious mutations.
Thorpe HA, Tourrette E, Yahara K, Vale FF, Liu S, Oleastro M, Alarcon T, Perets TT, Latifi-Navid S, Yamaoka Y, Martinez-Gonzalez B, Karayiannis I, Karamitros T, Sgouras DN, Elamin W, Pascoe B, Sheppard SK, Ronkainen J, Aro P, Engstrand L, Agreus L, Suerbaum S, Thorell K, Falush D. Thorpe HA, et al. Among authors: sheppard sk. Nat Commun. 2023 Mar 20;14(1):1539. doi: 10.1038/s41467-023-37302-5. Nat Commun. 2023. PMID: 36941300 Free PMC article. No abstract available.
A high fidelity approach to assembling the complex Borrelia genome.
Hepner S, Kuleshov K, Tooming-Kunderud A, Alig N, Gofton A, Casjens S, Rollins RE, Dangel A, Mourkas E, Sheppard SK, Wieser A, Hübner J, Sing A, Fingerle V, Margos G. Hepner S, et al. Among authors: sheppard sk. BMC Genomics. 2023 Jul 17;24(1):401. doi: 10.1186/s12864-023-09500-4. BMC Genomics. 2023. PMID: 37460975 Free PMC article.
Towards quantifying plasmid similarity.
Matlock W, Shaw LP, Sheppard SK, Feil E. Matlock W, et al. Among authors: sheppard sk. Microb Genom. 2024 Sep;10(9):001290. doi: 10.1099/mgen.0.001290. Microb Genom. 2024. PMID: 39264704 Free PMC article. Review.
Erratum: Towards quantifying plasmid similarity.
Matlock W, Shaw LP, Sheppard SK, Feil E. Matlock W, et al. Among authors: sheppard sk. Microb Genom. 2024 Dec;10(12). doi: 10.1099/mgen.0.001329. Microb Genom. 2024. PMID: 39670993 Free article. No abstract available.
162 results