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CSTs for Terabyte-Sized Data.
Oliva M, Cenzato D, Rossi M, Lipták Z, Gagie T, Boucher C. Oliva M, et al. Proc Data Compress Conf. 2022 Mar;2022:93-102. doi: 10.1109/dcc52660.2022.00017. Epub 2022 Jul 4. Proc Data Compress Conf. 2022. PMID: 38812828 Free PMC article.
Portable nanopore analytics: are we there yet?
Oliva M, Milicchio F, King K, Benson G, Boucher C, Prosperi M. Oliva M, et al. Bioinformatics. 2020 Aug 15;36(16):4399-4405. doi: 10.1093/bioinformatics/btaa237. Bioinformatics. 2020. PMID: 32277811 Free PMC article.
MONI: A Pangenomic Index for Finding Maximal Exact Matches.
Rossi M, Oliva M, Langmead B, Gagie T, Boucher C. Rossi M, et al. Among authors: oliva m. J Comput Biol. 2022 Feb;29(2):169-187. doi: 10.1089/cmb.2021.0290. Epub 2022 Jan 17. J Comput Biol. 2022. PMID: 35041495 Free PMC article.
Finding Maximal Exact Matches Using the r-Index.
Rossi M, Oliva M, Bonizzoni P, Langmead B, Gagie T, Boucher C. Rossi M, et al. Among authors: oliva m. J Comput Biol. 2022 Feb;29(2):188-194. doi: 10.1089/cmb.2021.0445. Epub 2022 Jan 17. J Comput Biol. 2022. PMID: 35041518 Free PMC article.
Recursive Prefix-Free Parsing for Building Big BWTs.
Oliva M, Gagie T, Boucher C. Oliva M, et al. bioRxiv [Preprint]. 2023 Jan 20:2023.01.18.524557. doi: 10.1101/2023.01.18.524557. bioRxiv. 2023. PMID: 36712109 Free PMC article. Preprint.
Pfp-fm: an accelerated FM-index.
Hong A, Oliva M, Köppl D, Bannai H, Boucher C, Gagie T. Hong A, et al. Among authors: oliva m. Algorithms Mol Biol. 2024 Apr 10;19(1):15. doi: 10.1186/s13015-024-00260-8. Algorithms Mol Biol. 2024. PMID: 38600518 Free PMC article.
905 results