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Mining the Enriched Subgraphs for Specific Vertices in a Biological Graph.
Meysman P, Saeys Y, Sabaghian E, Bittremieux W, Van de Peer Y, Goethals B, Laukens K. Meysman P, et al. Among authors: saeys y. IEEE/ACM Trans Comput Biol Bioinform. 2019 Sep-Oct;16(5):1496-1507. doi: 10.1109/TCBB.2016.2576440. Epub 2016 Jun 7. IEEE/ACM Trans Comput Biol Bioinform. 2019. PMID: 27295680
Network Inference from Single-Cell Transcriptomic Data.
Todorov H, Cannoodt R, Saelens W, Saeys Y. Todorov H, et al. Among authors: saeys y. Methods Mol Biol. 2019;1883:235-249. doi: 10.1007/978-1-4939-8882-2_10. Methods Mol Biol. 2019. PMID: 30547403
A comparison of single-cell trajectory inference methods.
Saelens W, Cannoodt R, Todorov H, Saeys Y. Saelens W, et al. Among authors: saeys y. Nat Biotechnol. 2019 May;37(5):547-554. doi: 10.1038/s41587-019-0071-9. Epub 2019 Apr 1. Nat Biotechnol. 2019. PMID: 30936559
Essential guidelines for computational method benchmarking.
Weber LM, Saelens W, Cannoodt R, Soneson C, Hapfelmeier A, Gardner PP, Boulesteix AL, Saeys Y, Robinson MD. Weber LM, et al. Among authors: saeys y. Genome Biol. 2019 Jun 20;20(1):125. doi: 10.1186/s13059-019-1738-8. Genome Biol. 2019. PMID: 31221194 Free PMC article. Review.
Stellate Cells, Hepatocytes, and Endothelial Cells Imprint the Kupffer Cell Identity on Monocytes Colonizing the Liver Macrophage Niche.
Bonnardel J, T'Jonck W, Gaublomme D, Browaeys R, Scott CL, Martens L, Vanneste B, De Prijck S, Nedospasov SA, Kremer A, Van Hamme E, Borghgraef P, Toussaint W, De Bleser P, Mannaerts I, Beschin A, van Grunsven LA, Lambrecht BN, Taghon T, Lippens S, Elewaut D, Saeys Y, Guilliams M. Bonnardel J, et al. Among authors: saeys y. Immunity. 2019 Oct 15;51(4):638-654.e9. doi: 10.1016/j.immuni.2019.08.017. Epub 2019 Sep 24. Immunity. 2019. PMID: 31561945 Free PMC article.
A scalable SCENIC workflow for single-cell gene regulatory network analysis.
Van de Sande B, Flerin C, Davie K, De Waegeneer M, Hulselmans G, Aibar S, Seurinck R, Saelens W, Cannoodt R, Rouchon Q, Verbeiren T, De Maeyer D, Reumers J, Saeys Y, Aerts S. Van de Sande B, et al. Among authors: saeys y. Nat Protoc. 2020 Jul;15(7):2247-2276. doi: 10.1038/s41596-020-0336-2. Epub 2020 Jun 19. Nat Protoc. 2020. PMID: 32561888
171 results