Friedman N - Search Results

1

SLAM-Drop-seq reveals mRNA kinetic rates throughout the cell cycle.

Liu H, Arsiè R, Schwabe D, Schilling M, Minia I, Alles J, Boltengagen A, Kocks C, Falcke M, Friedman N, Landthaler M, Rajewsky N. Liu H, et al. Among authors: friedman n. Mol Syst Biol. 2023 Oct;19(10):1-23. doi: 10.15252/msb.202211427. Epub 2023 Aug 28. Mol Syst Biol. 2023. PMID: 38778223 Free PMC article.

2

NovoSpaRc: flexible spatial reconstruction of single-cell gene expression with optimal transport.

Moriel N, Senel E, Friedman N, Rajewsky N, Karaiskos N, Nitzan M. Moriel N, et al. Among authors: friedman n. Nat Protoc. 2021 Sep;16(9):4177-4200. doi: 10.1038/s41596-021-00573-7. Epub 2021 Aug 4. Nat Protoc. 2021. PMID: 34349282

3

Genetic screen of the yeast environmental stress response dynamics uncovers distinct regulatory phases.

Gutin J, Joseph-Strauss D, Sadeh A, Shalom E, Friedman N. Gutin J, et al. Among authors: friedman n. Mol Syst Biol. 2019 Aug;15(8):e8939. doi: 10.15252/msb.20198939. Mol Syst Biol. 2019. PMID: 31464369 Free PMC article.

4

Transcription feedback dynamics in the wake of cytoplasmic mRNA degradation shutdown.

Chappleboim A, Joseph-Strauss D, Gershon O, Friedman N. Chappleboim A, et al. Among authors: friedman n. Nucleic Acids Res. 2022 Jun 10;50(10):5864-5880. doi: 10.1093/nar/gkac411. Nucleic Acids Res. 2022. PMID: 35640599 Free PMC article.

5

Using Bayesian networks to analyze expression data.

Friedman N, Linial M, Nachman I, Pe'er D. Friedman N, et al. J Comput Biol. 2000;7(3-4):601-20. doi: 10.1089/106652700750050961. J Comput Biol. 2000. PMID: 11108481

6

Context-specific Bayesian clustering for gene expression data.

Barash Y, Friedman N. Barash Y, et al. Among authors: friedman n. J Comput Biol. 2002;9(2):169-91. doi: 10.1089/10665270252935403. J Comput Biol. 2002. PMID: 12015876

7

ChIP-seq of plasma cell-free nucleosomes identifies gene expression programs of the cells of origin.

Sadeh R, Sharkia I, Fialkoff G, Rahat A, Gutin J, Chappleboim A, Nitzan M, Fox-Fisher I, Neiman D, Meler G, Kamari Z, Yaish D, Peretz T, Hubert A, Cohen JE, Salah A, Temper M, Grinshpun A, Maoz M, Abu-Gazala S, Ben Ya'acov A, Shteyer E, Safadi R, Kaplan T, Shemer R, Planer D, Galun E, Glaser B, Zick A, Dor Y, Friedman N. Sadeh R, et al. Among authors: friedman n. Nat Biotechnol. 2021 May;39(5):586-598. doi: 10.1038/s41587-020-00775-6. Epub 2021 Jan 11. Nat Biotechnol. 2021. PMID: 33432199 Free PMC article.

8

Blood mononuclear cell gene expression signature of postpartum depression.

Segman RH, Goltser-Dubner T, Weiner I, Canetti L, Galili-Weisstub E, Milwidsky A, Pablov V, Friedman N, Hochner-Celnikier D. Segman RH, et al. Among authors: friedman n. Mol Psychiatry. 2010 Jan;15(1):93-100, 2. doi: 10.1038/mp.2009.65. Epub 2009 Jul 7. Mol Psychiatry. 2010. PMID: 19581911

9

Inferring quantitative models of regulatory networks from expression data.

Nachman I, Regev A, Friedman N. Nachman I, et al. Among authors: friedman n. Bioinformatics. 2004 Aug 4;20 Suppl 1:i248-56. doi: 10.1093/bioinformatics/bth941. Bioinformatics. 2004. PMID: 15262806

10

Towards an integrated protein-protein interaction network: a relational Markov network approach.

Jaimovich A, Elidan G, Margalit H, Friedman N. Jaimovich A, et al. Among authors: friedman n. J Comput Biol. 2006 Mar;13(2):145-64. doi: 10.1089/cmb.2006.13.145. J Comput Biol. 2006. PMID: 16597232

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