Donald BR - Search Results

1

DexDesign: an OSPREY-based algorithm for designing de novo D-peptide inhibitors.

Guerin N, Childs H, Zhou P, Donald BR. Guerin N, et al. Among authors: donald br. Protein Eng Des Sel. 2024 Jan 29;37:gzae007. doi: 10.1093/protein/gzae007. Protein Eng Des Sel. 2024. PMID: 38757573

2

Compact Representation of Continuous Energy Surfaces for More Efficient Protein Design.

Hallen MA, Gainza P, Donald BR. Hallen MA, et al. Among authors: donald br. J Chem Theory Comput. 2015 May 12;11(5):2292-306. doi: 10.1021/ct501031m. J Chem Theory Comput. 2015. PMID: 26089744 Free PMC article.

3

A HAUSDORFF-BASED NOE ASSIGNMENT ALGORITHM USING PROTEIN BACKBONE DETERMINED FROM RESIDUAL DIPOLAR COUPLINGS AND ROTAMER PATTERNS.

Zeng JM, Tripathy C, Zhou P, Donald BR. Zeng JM, et al. Among authors: donald br. Comput Syst Bioinformatics Conf. 2008;2008:169-181. Comput Syst Bioinformatics Conf. 2008. PMID: 19122773 Free PMC article.

4

A Hausdorff-based NOE assignment algorithm using protein backbone determined from residual dipolar couplings and rotamer patterns.

Zeng J, Tripathy C, Zhou P, Donald BR. Zeng J, et al. Among authors: donald br. Comput Syst Bioinformatics Conf. 2008;7:169-81. Comput Syst Bioinformatics Conf. 2008. PMID: 19642278 Free article.

5

High-resolution protein structure determination starting with a global fold calculated from exact solutions to the RDC equations.

Zeng J, Boyles J, Tripathy C, Wang L, Yan A, Zhou P, Donald BR. Zeng J, et al. Among authors: donald br. J Biomol NMR. 2009 Nov;45(3):265-81. doi: 10.1007/s10858-009-9366-3. Epub 2009 Aug 27. J Biomol NMR. 2009. PMID: 19711185 Free PMC article.

6

A graphical method for analyzing distance restraints using residual dipolar couplings for structure determination of symmetric protein homo-oligomers.

Martin JW, Yan AK, Bailey-Kellogg C, Zhou P, Donald BR. Martin JW, et al. Among authors: donald br. Protein Sci. 2011 Jun;20(6):970-85. doi: 10.1002/pro.620. Epub 2011 Apr 27. Protein Sci. 2011. PMID: 21413097 Free PMC article.

7

Protein side-chain resonance assignment and NOE assignment using RDC-defined backbones without TOCSY data.

Zeng J, Zhou P, Donald BR. Zeng J, et al. Among authors: donald br. J Biomol NMR. 2011 Aug;50(4):371-95. doi: 10.1007/s10858-011-9522-4. Epub 2011 Jun 25. J Biomol NMR. 2011. PMID: 21706248 Free PMC article.

8

A Bayesian approach for determining protein side-chain rotamer conformations using unassigned NOE data.

Zeng J, Roberts KE, Zhou P, Donald BR. Zeng J, et al. Among authors: donald br. J Comput Biol. 2011 Nov;18(11):1661-79. doi: 10.1089/cmb.2011.0172. Epub 2011 Oct 4. J Comput Biol. 2011. PMID: 21970619 Free PMC article.

9

A geometric arrangement algorithm for structure determination of symmetric protein homo-oligomers from NOEs and RDCs.

Martin JW, Yan AK, Bailey-Kellogg C, Zhou P, Donald BR. Martin JW, et al. Among authors: donald br. J Comput Biol. 2011 Nov;18(11):1507-23. doi: 10.1089/cmb.2011.0173. Epub 2011 Oct 28. J Comput Biol. 2011. PMID: 22035328 Free PMC article.

10

Protein loop closure using orientational restraints from NMR data.

Tripathy C, Zeng J, Zhou P, Donald BR. Tripathy C, et al. Among authors: donald br. Proteins. 2012 Feb;80(2):433-53. doi: 10.1002/prot.23207. Epub 2011 Dec 13. Proteins. 2012. PMID: 22161780 Free PMC article.

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