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Addressing pandemic-wide systematic errors in the SARS-CoV-2 phylogeny.
Hunt M, Hinrichs AS, Anderson D, Karim L, Dearlove BL, Knaggs J, Constantinides B, Fowler PW, Rodger G, Street T, Lumley S, Webster H, Sanderson T, Ruis C, Kotzen B, de Maio N, Amenga-Etego LN, Amuzu DSY, Avaro M, Awandare GA, Ayivor-Djanie R, Barkham T, Bashton M, Batty EM, Bediako Y, De Belder D, Benedetti E, Bergthaler A, Boers SA, Campos J, Carr RAA, Chen YYC, Cuba F, Dattero ME, Dejnirattisai W, Dilthey A, Duedu KO, Endler L, Engelmann I, Francisco NM, Fuchs J, Gnimpieba EZ, Groc S, Gyamfi J, Heemskerk D, Houwaart T, Hsiao NY, Huska M, Hölzer M, Iranzadeh A, Jarva H, Jeewandara C, Jolly B, Joseph R, Kant R, Ki KKK, Kurkela S, Lappalainen M, Lataretu M, Lemieux J, Liu C, Malavige GN, Mashe T, Mongkolsapaya J, Montes B, Mora JAM, Morang'a CM, Mvula B, Nagarajan N, Nelson A, Ngoi JM, da Paixão JP, Panning M, Poklepovich T, Quashie PK, Ranasinghe D, Russo M, San JE, Sanderson ND, Scaria V, Screaton G, Sessions OM, Sironen T, Sisay A, Smith D, Smura T, Supasa P, Suphavilai C, Swann J, Tegally H, Tegomoh B, Vapalahti O, Walker A, Wilkinson RJ, Williamson C, Zair X; IMSSC2 Laboratory Network Consortium; de Oliveira T, Peto TE, Crook D, Corbett-Detig R, Iqbal Z. Hunt M, et al. Among authors: kant r. bioRxiv [Preprint]. 2024 Nov 5:2024.04.29.591666. doi: 10.1101/2024.04.29.591666. bioRxiv. 2024. PMID: 38746185 Free PMC article. Preprint.
From Microbial Genomics to Metagenomics.
Kant R, Kumar A, Sironen T. Kant R, et al. Int J Genomics. 2020 May 31;2020:9357450. doi: 10.1155/2020/9357450. eCollection 2020. Int J Genomics. 2020. PMID: 32566643 Free PMC article. No abstract available.
Introduction and Rapid Spread of SARS-CoV-2 Omicron Variant and Dynamics of BA.1 and BA.1.1 Sublineages, Finland, December 2021.
Vauhkonen H, Nguyen PT, Kant R, Plyusnin I, Erdin M, Kurkela S, Liimatainen H, Ikonen N, Blomqvist S, Liitsola K, Lindh E, Helve O, Jarva H, Loginov R, Palva A, Hannunen T, Hannula S, Parry M, Kauppi P, Vaheri A, Sironen T, Lappalainen M, Savolainen-Kopra C, Smura T, Vapalahti O. Vauhkonen H, et al. Among authors: kant r. Emerg Infect Dis. 2022 Jun;28(6):1229-1232. doi: 10.3201/eid2806.220515. Epub 2022 Apr 4. Emerg Infect Dis. 2022. PMID: 35378057 Free PMC article.
The phylodynamics of SARS-CoV-2 during 2020 in Finland.
Truong Nguyen P, Kant R, Van den Broeck F, Suvanto MT, Alburkat H, Virtanen J, Ahvenainen E, Castren R, Hong SL, Baele G, Ahava MJ, Jarva H, Jokiranta ST, Kallio-Kokko H, Kekäläinen E, Kirjavainen V, Kortela E, Kurkela S, Lappalainen M, Liimatainen H, Suchard MA, Hannula S, Ellonen P, Sironen T, Lemey P, Vapalahti O, Smura T. Truong Nguyen P, et al. Among authors: kant r. Commun Med (Lond). 2022 Jun 10;2:65. doi: 10.1038/s43856-022-00130-7. eCollection 2022. Commun Med (Lond). 2022. PMID: 35698660 Free PMC article.
835 results