Miller H - Search Results

1

Approaches for Mapping and Analysis of R-loops.

Mukhopadhyay P, Miller H, Stoja A, Bishop AJR. Mukhopadhyay P, et al. Among authors: miller h. Curr Protoc. 2024 Apr;4(4):e1037. doi: 10.1002/cpz1.1037. Curr Protoc. 2024. PMID: 38666626 Review.

2

Reconstruction of Ewing Sarcoma Developmental Context from Mass-Scale Transcriptomics Reveals Characteristics of EWSR1-FLI1 Permissibility.

Miller HE, Gorthi A, Bassani N, Lawrence LA, Iskra BS, Bishop AJR. Miller HE, et al. Cancers (Basel). 2020 Apr 11;12(4):948. doi: 10.3390/cancers12040948. Cancers (Basel). 2020. PMID: 32290418 Free PMC article.

3

Cohesin SA1 and SA2 are RNA binding proteins that localize to RNA containing regions on DNA.

Pan H, Jin M, Ghadiyaram A, Kaur P, Miller HE, Ta HM, Liu M, Fan Y, Mahn C, Gorthi A, You C, Piehler J, Riehn R, Bishop AJR, Tao YJ, Wang H. Pan H, et al. Among authors: miller he. Nucleic Acids Res. 2020 Jun 4;48(10):5639-5655. doi: 10.1093/nar/gkaa284. Nucleic Acids Res. 2020. PMID: 32352519 Free PMC article.

4

Correlation AnalyzeR: functional predictions from gene co-expression correlations.

Miller HE, Bishop AJR. Miller HE, et al. BMC Bioinformatics. 2021 Apr 20;22(1):206. doi: 10.1186/s12859-021-04130-7. BMC Bioinformatics. 2021. PMID: 33879054 Free PMC article.

5

FibroDB: Expression Analysis of Protein-Coding and Long Non-Coding RNA Genes in Fibrosis.

Ilieva M, Miller HE, Agarwal A, Paulus GK, Madsen JH, Bishop AJR, Kauppinen S, Uchida S. Ilieva M, et al. Noncoding RNA. 2022 Jan 28;8(1):13. doi: 10.3390/ncrna8010013. Noncoding RNA. 2022. PMID: 35202087 Free PMC article.

6

Current Status of Epitranscriptomic Marks Affecting lncRNA Structures and Functions.

Miller HE, Ilieva M, Bishop AJR, Uchida S. Miller HE, et al. Noncoding RNA. 2022 Mar 28;8(2):23. doi: 10.3390/ncrna8020023. Noncoding RNA. 2022. PMID: 35447886 Free PMC article. Review.

7

Development and characterization of a mass cytometry panel for detecting the effect of acute doxorubicin exposure on murine cardiac nonmyocytes.

Iskra BS, Davis L, Miller HE, Chiu YC, Bishop AJR, Chen Y, Aune GJ. Iskra BS, et al. Am J Physiol Heart Circ Physiol. 2022 Jul 1;323(1):H130-H145. doi: 10.1152/ajpheart.00514.2021. Epub 2022 Jun 3. Am J Physiol Heart Circ Physiol. 2022. PMID: 35657614 Free PMC article.

8

Quality-controlled R-loop meta-analysis reveals the characteristics of R-loop consensus regions.

Miller HE, Montemayor D, Abdul J, Vines A, Levy SA, Hartono SR, Sharma K, Frost B, Chédin F, Bishop AJR. Miller HE, et al. Nucleic Acids Res. 2022 Jul 22;50(13):7260-7286. doi: 10.1093/nar/gkac537. Nucleic Acids Res. 2022. PMID: 35758606 Free PMC article.

9

Systematic Analysis of Long Non-Coding RNA Genes in Nonalcoholic Fatty Liver Disease.

Ilieva M, Dao J, Miller HE, Madsen JH, Bishop AJR, Kauppinen S, Uchida S. Ilieva M, et al. Noncoding RNA. 2022 Jul 22;8(4):56. doi: 10.3390/ncrna8040056. Noncoding RNA. 2022. PMID: 35893239 Free PMC article.

10

Exploration and analysis of R-loop mapping data with RLBase.

Miller HE, Montemayor D, Li J, Levy SA, Pawar R, Hartono S, Sharma K, Frost B, Chedin F, Bishop AJR. Miller HE, et al. Nucleic Acids Res. 2023 Jan 6;51(D1):D1129-D1137. doi: 10.1093/nar/gkac732. Nucleic Acids Res. 2023. PMID: 36039757 Free PMC article.

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