Dekker J - Search Results

1

Rules of engagement for condensins and cohesins guide mitotic chromosome formation.

Samejima K, Gibcus JH, Abraham S, Cisneros-Soberanis F, Samejima I, Beckett AJ, Pučeková N, Abad MA, Medina-Pritchard B, Paulson JR, Xie L, Jeyaprakash AA, Prior IA, Mirny LA, Dekker J, Goloborodko A, Earnshaw WC. Samejima K, et al. Among authors: dekker j. bioRxiv [Preprint]. 2024 Apr 30:2024.04.18.590027. doi: 10.1101/2024.04.18.590027. bioRxiv. 2024. PMID: 38659940 Free PMC article. Preprint.

2

The context of gene expression regulation.

Gibcus JH, Dekker J. Gibcus JH, et al. Among authors: dekker j. F1000 Biol Rep. 2012;4:8. doi: 10.3410/B4-8. Epub 2012 Apr 2. F1000 Biol Rep. 2012. PMID: 22500194 Free PMC article.

3

Iterative correction of Hi-C data reveals hallmarks of chromosome organization.

Imakaev M, Fudenberg G, McCord RP, Naumova N, Goloborodko A, Lajoie BR, Dekker J, Mirny LA. Imakaev M, et al. Among authors: dekker j. Nat Methods. 2012 Oct;9(10):999-1003. doi: 10.1038/nmeth.2148. Epub 2012 Sep 2. Nat Methods. 2012. PMID: 22941365 Free PMC article.

4

The hierarchy of the 3D genome.

Gibcus JH, Dekker J. Gibcus JH, et al. Among authors: dekker j. Mol Cell. 2013 Mar 7;49(5):773-82. doi: 10.1016/j.molcel.2013.02.011. Mol Cell. 2013. PMID: 23473598 Free PMC article. Review.

5

Exploring the three-dimensional organization of genomes: interpreting chromatin interaction data.

Dekker J, Marti-Renom MA, Mirny LA. Dekker J, et al. Nat Rev Genet. 2013 Jun;14(6):390-403. doi: 10.1038/nrg3454. Epub 2013 May 9. Nat Rev Genet. 2013. PMID: 23657480 Free PMC article. Review.

6

Biological techniques: Chromosomes captured one by one.

Dekker J, Mirny L. Dekker J, et al. Nature. 2013 Oct 3;502(7469):45-6. doi: 10.1038/nature12691. Epub 2013 Sep 25. Nature. 2013. PMID: 24067607 No abstract available.

7

Organization of the mitotic chromosome.

Naumova N, Imakaev M, Fudenberg G, Zhan Y, Lajoie BR, Mirny LA, Dekker J. Naumova N, et al. Among authors: dekker j. Science. 2013 Nov 22;342(6161):948-53. doi: 10.1126/science.1236083. Epub 2013 Nov 7. Science. 2013. PMID: 24200812 Free PMC article.

8

The 3D Genome as Moderator of Chromosomal Communication.

Dekker J, Mirny L. Dekker J, et al. Cell. 2016 Mar 10;164(6):1110-1121. doi: 10.1016/j.cell.2016.02.007. Cell. 2016. PMID: 26967279 Free PMC article. Review.

9

Hi-C 2.0: An optimized Hi-C procedure for high-resolution genome-wide mapping of chromosome conformation.

Belaghzal H, Dekker J, Gibcus JH. Belaghzal H, et al. Among authors: dekker j. Methods. 2017 Jul 1;123:56-65. doi: 10.1016/j.ymeth.2017.04.004. Epub 2017 Apr 18. Methods. 2017. PMID: 28435001 Free PMC article.

10

Targeted Degradation of CTCF Decouples Local Insulation of Chromosome Domains from Genomic Compartmentalization.

Nora EP, Goloborodko A, Valton AL, Gibcus JH, Uebersohn A, Abdennur N, Dekker J, Mirny LA, Bruneau BG. Nora EP, et al. Among authors: dekker j. Cell. 2017 May 18;169(5):930-944.e22. doi: 10.1016/j.cell.2017.05.004. Cell. 2017. PMID: 28525758 Free PMC article.

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