Masel J - Search Results

1

Order of amino acid recruitment into the genetic code resolved by Last Universal Common Ancestor's protein domains.

Wehbi S, Wheeler A, Morel B, Manepalli N, Minh BQ, Lauretta DS, Masel J. Wehbi S, et al. Among authors: masel j. bioRxiv [Preprint]. 2024 Oct 24:2024.04.13.589375. doi: 10.1101/2024.04.13.589375. bioRxiv. 2024. Update in: Proc Natl Acad Sci U S A. 2024 Dec 24;121(52):e2410311121. doi: 10.1073/pnas.2410311121 PMID: 38659899 Free PMC article. Updated. Preprint.

2

Only a Single Taxonomically Restricted Gene Family in the Drosophila melanogaster Subgroup Can Be Identified with High Confidence.

Zile K, Dessimoz C, Wurm Y, Masel J. Zile K, et al. Among authors: masel j. Genome Biol Evol. 2020 Aug 1;12(8):1355-1366. doi: 10.1093/gbe/evaa127. Genome Biol Evol. 2020. PMID: 32589737 Free PMC article.

3

Evolution of molecular error rates and the consequences for evolvability.

Rajon E, Masel J. Rajon E, et al. Among authors: masel j. Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1082-7. doi: 10.1073/pnas.1012918108. Epub 2011 Jan 3. Proc Natl Acad Sci U S A. 2011. PMID: 21199946 Free PMC article.

4

Mutation bias can shape adaptation in large asexual populations experiencing clonal interference.

Gomez K, Bertram J, Masel J. Gomez K, et al. Among authors: masel j. Proc Biol Sci. 2020 Oct 28;287(1937):20201503. doi: 10.1098/rspb.2020.1503. Epub 2020 Oct 21. Proc Biol Sci. 2020. PMID: 33081612 Free PMC article.

5

Differential Retention of Pfam Domains Contributes to Long-term Evolutionary Trends.

James JE, Nelson PG, Masel J. James JE, et al. Among authors: masel j. Mol Biol Evol. 2023 Apr 4;40(4):msad073. doi: 10.1093/molbev/msad073. Mol Biol Evol. 2023. PMID: 36947137 Free PMC article.

6

What Fraction of Duplicates Observed in Recently Sequenced Genomes Is Segregating and Destined to Fail to Fix?

Teufel AI, Masel J, Liberles DA. Teufel AI, et al. Among authors: masel j. Genome Biol Evol. 2015 Jul 27;7(8):2258-64. doi: 10.1093/gbe/evv139. Genome Biol Evol. 2015. PMID: 26220936 Free PMC article.

7

nQMaker: Estimating Time Nonreversible Amino Acid Substitution Models.

Dang CC, Minh BQ, McShea H, Masel J, James JE, Vinh LS, Lanfear R. Dang CC, et al. Among authors: masel j. Syst Biol. 2022 Aug 10;71(5):1110-1123. doi: 10.1093/sysbio/syac007. Syst Biol. 2022. PMID: 35139203 Free PMC article.

8

The protein domains of vertebrate species in which selection is more effective have greater intrinsic structural disorder.

Weibel CA, Wheeler AL, James JE, Willis SM, McShea H, Masel J. Weibel CA, et al. Among authors: masel j. bioRxiv [Preprint]. 2024 Apr 25:2023.03.02.530449. doi: 10.1101/2023.03.02.530449. bioRxiv. 2024. Update in: Elife. 2024 Sep 06;12:RP87335. doi: 10.7554/eLife.87335 PMID: 38712167 Free PMC article. Updated. Preprint.

9

The effectiveness of selection in a species affects the direction of amino acid frequency evolution.

McShea H, Weibel C, Wehbi S, Goodman P, James JE, Wheeler AL, Masel J. McShea H, et al. Among authors: masel j. bioRxiv [Preprint]. 2024 Jun 22:2023.02.01.526552. doi: 10.1101/2023.02.01.526552. bioRxiv. 2024. PMID: 38948853 Free PMC article. Preprint.

10

The protein domains of vertebrate species in which selection is more effective have greater intrinsic structural disorder.

Weibel CA, Wheeler AL, James JE, Willis SM, McShea H, Masel J. Weibel CA, et al. Among authors: masel j. Elife. 2024 Sep 6;12:RP87335. doi: 10.7554/eLife.87335. Elife. 2024. PMID: 39239703 Free PMC article.

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