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Page 1
Functional protein mining with conformal guarantees.
Boger RS, Chithrananda S, Angelopoulos AN, Yoon PH, Jordan MI, Doudna JA. Boger RS, et al. Among authors: chithrananda s. Nat Commun. 2025 Jan 2;16(1):85. doi: 10.1038/s41467-024-55676-y. Nat Commun. 2025. PMID: 39747192 Free PMC article.
RNA language models predict mutations that improve RNA function.
Shulgina Y, Trinidad MI, Langeberg CJ, Nisonoff H, Chithrananda S, Skopintsev P, Nissley AJ, Patel J, Boger RS, Shi H, Yoon PH, Doherty EE, Pande T, Iyer AM, Doudna JA, Cate JHD. Shulgina Y, et al. Among authors: chithrananda s. Nat Commun. 2024 Dec 5;15(1):10627. doi: 10.1038/s41467-024-54812-y. Nat Commun. 2024. PMID: 39638800 Free PMC article.
RNA language models predict mutations that improve RNA function.
Shulgina Y, Trinidad MI, Langeberg CJ, Nisonoff H, Chithrananda S, Skopintsev P, Nissley AJ, Patel J, Boger RS, Shi H, Yoon PH, Doherty EE, Pande T, Iyer AM, Doudna JA, Cate JHD. Shulgina Y, et al. Among authors: chithrananda s. bioRxiv [Preprint]. 2024 Sep 16:2024.04.05.588317. doi: 10.1101/2024.04.05.588317. bioRxiv. 2024. Update in: Nat Commun. 2024 Dec 5;15(1):10627. doi: 10.1038/s41467-024-54812-y. PMID: 38617247 Free PMC article. Updated. Preprint.
Assigning confidence to molecular property prediction.
Nigam A, Pollice R, Hurley MFD, Hickman RJ, Aldeghi M, Yoshikawa N, Chithrananda S, Voelz VA, Aspuru-Guzik A. Nigam A, et al. Among authors: chithrananda s. Expert Opin Drug Discov. 2021 Sep;16(9):1009-1023. doi: 10.1080/17460441.2021.1925247. Epub 2021 Jun 15. Expert Opin Drug Discov. 2021. PMID: 34126827 Free PMC article.