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RNA language models predict mutations that improve RNA function.
Shulgina Y, Trinidad MI, Langeberg CJ, Nisonoff H, Chithrananda S, Skopintsev P, Nissley AJ, Patel J, Boger RS, Shi H, Yoon PH, Doherty EE, Pande T, Iyer AM, Doudna JA, Cate JHD. Shulgina Y, et al. Among authors: cate jhd. bioRxiv [Preprint]. 2024 Sep 16:2024.04.05.588317. doi: 10.1101/2024.04.05.588317. bioRxiv. 2024. Update in: Nat Commun. 2024 Dec 5;15(1):10627. doi: 10.1038/s41467-024-54812-y PMID: 38617247 Free PMC article. Updated. Preprint.
Programmable RNA recognition using a CRISPR-associated Argonaute.
Lapinaite A, Doudna JA, Cate JHD. Lapinaite A, et al. Among authors: cate jhd. Proc Natl Acad Sci U S A. 2018 Mar 27;115(13):3368-3373. doi: 10.1073/pnas.1717725115. Epub 2018 Mar 12. Proc Natl Acad Sci U S A. 2018. PMID: 29531059 Free PMC article.
eIF3 engages with 3'-UTR termini of highly translated mRNAs.
Mestre-Fos S, Ferguson L, Trinidad M, Ingolia NT, Cate JHD. Mestre-Fos S, et al. Among authors: cate jhd. bioRxiv [Preprint]. 2024 Nov 24:2023.11.11.566681. doi: 10.1101/2023.11.11.566681. bioRxiv. 2024. PMID: 37986910 Free PMC article. Preprint.
RNA language models predict mutations that improve RNA function.
Shulgina Y, Trinidad MI, Langeberg CJ, Nisonoff H, Chithrananda S, Skopintsev P, Nissley AJ, Patel J, Boger RS, Shi H, Yoon PH, Doherty EE, Pande T, Iyer AM, Doudna JA, Cate JHD. Shulgina Y, et al. Among authors: cate jhd. Nat Commun. 2024 Dec 5;15(1):10627. doi: 10.1038/s41467-024-54812-y. Nat Commun. 2024. PMID: 39638800 Free PMC article.
134 results