Shakya M - Search Results

1

Recommendations for Uniform Variant Calling of SARS-CoV-2 Genome Sequence across Bioinformatic Workflows.

Connor R, Shakya M, Yarmosh DA, Maier W, Martin R, Bradford R, Brister JR, Chain PSG, Copeland CA, di Iulio J, Hu B, Ebert P, Gunti J, Jin Y, Katz KS, Kochergin A, LaRosa T, Li J, Li PE, Lo CC, Rashid S, Maiorova ES, Xiao C, Zalunin V, Purcell L, Pruitt KD. Connor R, et al. Among authors: shakya m. Viruses. 2024 Mar 11;16(3):430. doi: 10.3390/v16030430. Viruses. 2024. PMID: 38543795 Free PMC article.

2

Intrahost SARS-CoV-2 k-mer Identification Method (iSKIM) for Rapid Detection of Mutations of Concern Reveals Emergence of Global Mutation Patterns.

Thommana A, Shakya M, Gandhi J, Fung CK, Chain PSG, Maljkovic Berry I, Conte MA. Thommana A, et al. Among authors: shakya m. Viruses. 2022 Sep 27;14(10):2128. doi: 10.3390/v14102128. Viruses. 2022. PMID: 36298683 Free PMC article.

3

Experimental evidence for the impact of soil viruses on carbon cycling during surface plant litter decomposition.

Albright MBN, Gallegos-Graves V, Feeser KL, Montoya K, Emerson JB, Shakya M, Dunbar J. Albright MBN, et al. Among authors: shakya m. ISME Commun. 2022 Mar 16;2(1):24. doi: 10.1038/s43705-022-00109-4. ISME Commun. 2022. PMID: 37938672 Free PMC article.

4

Exploring immunogenic CD8 + T-cell epitopes for peptide-based vaccine development against evolving SARS-CoV-2 variants: An immunoinformatics approach.

Khan MS, Shakya M, Verma CK. Khan MS, et al. Among authors: shakya m. Virusdisease. 2024 Dec;35(4):553-566. doi: 10.1007/s13337-024-00894-7. Epub 2024 Sep 30. Virusdisease. 2024. PMID: 39677846

5

Development and validation of the nomogram model derived non-contrast CT score to predict hematoma expansion in patients with spontaneous intracerebral hemorrhage.

Shakya MR, Zheng C, Fu F, Sun S, Lu J. Shakya MR, et al. Clin Radiol. 2024 Sep 6;80:106694. doi: 10.1016/j.crad.2024.08.035. Online ahead of print. Clin Radiol. 2024. PMID: 39520934

6

Assessment of farmers' knowledge, attitudes and control practices (KAP) to mitigate acaricide resistance and tick-borne diseases.

Jamra S, Shakya M, Jayraw AK, Agrawal V, Singh M, Sharma AK, Bhangale GN, Jatav GP, Jamra N. Jamra S, et al. Among authors: shakya m. Parasitology. 2024 Oct 25:1-12. doi: 10.1017/S0031182024001331. Online ahead of print. Parasitology. 2024. PMID: 39450751

7

Philtral Column and Nostril Shape Pattern in Nepalese Population: Comparative Study between Two Ethnic Groups of Nepal.

Chaurasia NK , Upadhyaya C , Mahantha S , Upadhyaya S , Shakya M , Upreti S , Bhandari B , Baral I . Chaurasia NK , et al. Among authors: shakya m. Kathmandu Univ Med J (KUMJ). 2024 Jan-Mar;22(85):55-59. Kathmandu Univ Med J (KUMJ). 2024. PMID: 39324459

8

Guardians Looking From Outside: Gendered Experiences of Labor Migration and Psychosocial Health Among Nepalese Migrant Fathers and Left-Behind Mothers.

Nguyen M, Kim Y, Choi Y, Jang J, Shakya M, Adhikari A, Luitel NP, Surkan PJ. Nguyen M, et al. Among authors: shakya m. Qual Health Res. 2024 Sep 18:10497323241265291. doi: 10.1177/10497323241265291. Online ahead of print. Qual Health Res. 2024. PMID: 39293817

9

Identification of highly conserved surface-exposed peptides of spike protein for multiepitope vaccine design against emerging omicron variants: An immunoinformatic approach.

Sultan Khan M, Shakya M, Kumar Verma C, Mukherjee R. Sultan Khan M, et al. Among authors: shakya m. Hum Immunol. 2024 Nov;85(6):111117. doi: 10.1016/j.humimm.2024.111117. Epub 2024 Sep 13. Hum Immunol. 2024. PMID: 39276411

10

Pathogen diversity and antimicrobial resistance transmission of Salmonella enterica serovars Typhi and Paratyphi A in Bangladesh, Nepal, and Malawi: a genomic epidemiological study.

Dyson ZA, Ashton PM, Khanam F, Chunga Chirambo A, Shakya M, Meiring JE, Tonks S, Karkey A, Msefula C, Clemens JD, Dunstan SJ, Baker S, Dougan G, Pitzer VE, Basnyat B, Qadri F, Heyderman RS, Gordon MA, Pollard AJ, Holt KE; STRATAA Study Group. Dyson ZA, et al. Among authors: shakya m. Lancet Microbe. 2024 Aug;5(8):100841. doi: 10.1016/S2666-5247(24)00047-8. Epub 2024 Jul 9. Lancet Microbe. 2024. PMID: 38996496 Free PMC article.

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