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Page 1
Recommendations for Uniform Variant Calling of SARS-CoV-2 Genome Sequence across Bioinformatic Workflows.
Connor R, Shakya M, Yarmosh DA, Maier W, Martin R, Bradford R, Brister JR, Chain PSG, Copeland CA, di Iulio J, Hu B, Ebert P, Gunti J, Jin Y, Katz KS, Kochergin A, LaRosa T, Li J, Li PE, Lo CC, Rashid S, Maiorova ES, Xiao C, Zalunin V, Purcell L, Pruitt KD. Connor R, et al. Among authors: kochergin a. Viruses. 2024 Mar 11;16(3):430. doi: 10.3390/v16030430. Viruses. 2024. PMID: 38543795 Free PMC article.
Towards increased accuracy and reproducibility in SARS-CoV-2 next generation sequence analysis for public health surveillance.
Connor R, Yarmosh DA, Maier W, Shakya M, Martin R, Bradford R, Brister JR, Chain PS, Copeland CA, di Iulio J, Hu B, Ebert P, Gunti J, Jin Y, Katz KS, Kochergin A, LaRosa T, Li J, Li PE, Lo CC, Rashid S, Maiorova ES, Xiao C, Zalunin V, Pruitt KD. Connor R, et al. Among authors: kochergin a. bioRxiv [Preprint]. 2022 Nov 3:2022.11.03.515010. doi: 10.1101/2022.11.03.515010. bioRxiv. 2022. Update in: Viruses. 2024 Mar 11;16(3):430. doi: 10.3390/v16030430 PMID: 36380755 Free PMC article. Updated. Preprint.
NCBI GEO: archive for gene expression and epigenomics data sets: 23-year update.
Clough E, Barrett T, Wilhite SE, Ledoux P, Evangelista C, Kim IF, Tomashevsky M, Marshall KA, Phillippy KH, Sherman PM, Lee H, Zhang N, Serova N, Wagner L, Zalunin V, Kochergin A, Soboleva A. Clough E, et al. Among authors: kochergin a. Nucleic Acids Res. 2024 Jan 5;52(D1):D138-D144. doi: 10.1093/nar/gkad965. Nucleic Acids Res. 2024. PMID: 37933855 Free PMC article.
A web-based genotyping resource for viral sequences.
Rozanov M, Plikat U, Chappey C, Kochergin A, Tatusova T. Rozanov M, et al. Among authors: kochergin a. Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W654-9. doi: 10.1093/nar/gkh419. Nucleic Acids Res. 2004. PMID: 15215470 Free PMC article.
Search and study of the space debris and asteroids within ISON project.
Molotov IE, Krugly YN, Elenin LV, Schildknecht T, Rumyantsev VV, Inasaridze RY, Aivazyan VR, Kapanadze GV, Canals LR, Graziani F, Teofilatto P, Ehgamberdiev SA, Burkhonov OA, Chornaya ED, Kochergin AV, Abdel-Aziz YA, Abdelaziz AM, Kouprianov VV, Zakhvatkin MV, Stepanyants VA, Reva IV, Serebryanskiy AV, Schmalz SE, Nikolenko IV. Molotov IE, et al. Among authors: kochergin av. An Acad Bras Cienc. 2021 Feb 22;93(suppl 1):e20200145. doi: 10.1590/0001-3765202120200145. eCollection 2021. An Acad Bras Cienc. 2021. PMID: 33624725 Free article.
[Utilization of detoxification products of yperite-lewisite mixtures].
Boronin AM, Sakharovskiĭ VG, Ermakova IT, Grechkina GM, Starovoĭtov II, Tugoshov VI, Kochergin AI, Kashparova EV, Kuz'min NP. Boronin AM, et al. Among authors: kochergin ai. Prikl Biokhim Mikrobiol. 1999 Nov-Dec;35(6):671-8. Prikl Biokhim Mikrobiol. 1999. PMID: 10623966 Russian.