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A revamped rat reference genome improves the discovery of genetic diversity in laboratory rats.
de Jong TV, Pan Y, Rastas P, Munro D, Tutaj M, Akil H, Benner C, Chen D, Chitre AS, Chow W, Colonna V, Dalgard CL, Demos WM, Doris PA, Garrison E, Geurts AM, Gunturkun HM, Guryev V, Hourlier T, Howe K, Huang J, Kalbfleisch T, Kim P, Li L, Mahaffey S, Martin FJ, Mohammadi P, Ozel AB, Polesskaya O, Pravenec M, Prins P, Sebat J, Smith JR, Solberg Woods LC, Tabakoff B, Tracey A, Uliano-Silva M, Villani F, Wang H, Sharp BM, Telese F, Jiang Z, Saba L, Wang X, Murphy TD, Palmer AA, Kwitek AE, Dwinell MR, Williams RW, Li JZ, Chen H. de Jong TV, et al. Among authors: dwinell mr. Cell Genom. 2024 Apr 10;4(4):100527. doi: 10.1016/j.xgen.2024.100527. Epub 2024 Mar 26. Cell Genom. 2024. PMID: 38537634 Free PMC article.
A revamped rat reference genome improves the discovery of genetic diversity in laboratory rats.
de Jong TV, Pan Y, Rastas P, Munro D, Tutaj M, Akil H, Benner C, Chen D, Chitre AS, Chow W, Colonna V, Dalgard CL, Demos WM, Doris PA, Garrison E, Geurts AM, Gunturkun HM, Guryev V, Hourlier T, Howe K, Huang J, Kalbfleisch T, Kim P, Li L, Mahaffey S, Martin FJ, Mohammadi P, Ozel AB, Polesskaya O, Pravenec M, Prins P, Sebat J, Smith JR, Solberg Woods LC, Tabakoff B, Tracey A, Uliano-Silva M, Villani F, Wang H, Sharp BM, Telese F, Jiang Z, Saba L, Wang X, Murphy TD, Palmer AA, Kwitek AE, Dwinell MR, Williams RW, Li JZ, Chen H. de Jong TV, et al. Among authors: dwinell mr. bioRxiv [Preprint]. 2023 Sep 28:2023.04.13.536694. doi: 10.1101/2023.04.13.536694. bioRxiv. 2023. Update in: Cell Genom. 2024 Apr 10;4(4):100527. doi: 10.1016/j.xgen.2024.100527 PMID: 37214860 Free PMC article. Updated. Preprint.
Rat Genome and Model Resources.
Shimoyama M, Smith JR, Bryda E, Kuramoto T, Saba L, Dwinell M. Shimoyama M, et al. ILAR J. 2017 Jul 1;58(1):42-58. doi: 10.1093/ilar/ilw041. ILAR J. 2017. PMID: 28838068 Free PMC article. Review.
The genome sequence of the Norway rat, Rattus norvegicus Berkenhout 1769.
Howe K, Dwinell M, Shimoyama M, Corton C, Betteridge E, Dove A, Quail MA, Smith M, Saba L, Williams RW, Chen H, Kwitek AE, McCarthy SA, Uliano-Silva M, Chow W, Tracey A, Torrance J, Sims Y, Challis R, Threlfall J, Blaxter M. Howe K, et al. Wellcome Open Res. 2021 May 18;6:118. doi: 10.12688/wellcomeopenres.16854.1. eCollection 2021. Wellcome Open Res. 2021. PMID: 34660910 Free PMC article.
The Rat Genome Database: Genetic, Genomic, and Phenotypic Data Across Multiple Species.
Laulederkind SJF, Hayman GT, Wang SJ, Kaldunski ML, Vedi M, Demos WM, Tutaj M, Smith JR, Lamers L, Gibson AC, Thorat K, Thota J, Tutaj MA, de Pons JL, Dwinell MR, Kwitek AE. Laulederkind SJF, et al. Among authors: dwinell mr. Curr Protoc. 2023 Jun;3(6):e804. doi: 10.1002/cpz1.804. Curr Protoc. 2023. PMID: 37347557 Free PMC article. Review.
The emerging role for rat models in gene discovery.
Dwinell MR, Lazar J, Geurts AM. Dwinell MR, et al. Mamm Genome. 2011 Aug;22(7-8):466-75. doi: 10.1007/s00335-011-9346-2. Epub 2011 Jul 6. Mamm Genome. 2011. PMID: 21732192 Free PMC article. Review.
The Rat: A Model Used in Biomedical Research.
Smith JR, Bolton ER, Dwinell MR. Smith JR, et al. Among authors: dwinell mr. Methods Mol Biol. 2019;2018:1-41. doi: 10.1007/978-1-4939-9581-3_1. Methods Mol Biol. 2019. PMID: 31228150
Rare disease research resources at the Rat Genome Database.
Kaldunski ML, Smith JR, Brodie KC, De Pons JL, Demos WM, Gibson AC, Hayman GT, Lamers L, Laulederkind SJF, Thorat K, Thota J, Tutaj MA, Tutaj M, Vedi M, Wang SJ, Zacher S, Dwinell MR, Kwitek AE. Kaldunski ML, et al. Among authors: dwinell mr. Genetics. 2023 Aug 9;224(4):iyad078. doi: 10.1093/genetics/iyad078. Genetics. 2023. PMID: 37119810 Free PMC article.
The Year of the Rat: The Rat Genome Database at 20: a multi-species knowledgebase and analysis platform.
Smith JR, Hayman GT, Wang SJ, Laulederkind SJF, Hoffman MJ, Kaldunski ML, Tutaj M, Thota J, Nalabolu HS, Ellanki SLR, Tutaj MA, De Pons JL, Kwitek AE, Dwinell MR, Shimoyama ME. Smith JR, et al. Among authors: dwinell mr. Nucleic Acids Res. 2020 Jan 8;48(D1):D731-D742. doi: 10.1093/nar/gkz1041. Nucleic Acids Res. 2020. PMID: 31713623 Free PMC article.
103 results