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Page 1
Predictive Biophysical Neural Network Modeling of a Compendium of in vivo Transcription Factor DNA Binding Profiles for Escherichia coli.
Lally P, Gómez-Romero L, Tierrafría VH, Aquino P, Rioualen C, Zhang X, Kim S, Baniulyte G, Plitnick J, Smith C, Babu M, Collado-Vides J, Wade JT, Galagan JE. Lally P, et al. Among authors: rioualen c. bioRxiv [Preprint]. 2024 May 24:2024.05.23.594371. doi: 10.1101/2024.05.23.594371. bioRxiv. 2024. PMID: 38826350 Free PMC article. Preprint.
A Gold Standard for Transcription Factor Regulatory Interactions in Escherichia coli K-12: Architecture of Evidence Types.
Lara P, Gama-Castro S, Salgado H, Rioualen C, Tierrafría VH, Muñiz-Rascado LJ, Bonavides-Martínez C, Collado-Vides J. Lara P, et al. Among authors: rioualen c. bioRxiv [Preprint]. 2023 Dec 11:2023.02.25.530038. doi: 10.1101/2023.02.25.530038. bioRxiv. 2023. Update in: Front Genet. 2024 Mar 05;15:1353553. doi: 10.3389/fgene.2024.1353553 PMID: 37163020 Free PMC article. Updated. Preprint.
RegulonDB 11.0: Comprehensive high-throughput datasets on transcriptional regulation in Escherichia coli K-12.
Tierrafría VH, Rioualen C, Salgado H, Lara P, Gama-Castro S, Lally P, Gómez-Romero L, Peña-Loredo P, López-Almazo AG, Alarcón-Carranza G, Betancourt-Figueroa F, Alquicira-Hernández S, Polanco-Morelos JE, García-Sotelo J, Gaytan-Nuñez E, Méndez-Cruz CF, Muñiz LJ, Bonavides-Martínez C, Moreno-Hagelsieb G, Galagan JE, Wade JT, Collado-Vides J. Tierrafría VH, et al. Among authors: rioualen c. Microb Genom. 2022 May;8(5):mgen000833. doi: 10.1099/mgen.0.000833. Microb Genom. 2022. PMID: 35584008 Free PMC article.
A genome-wide RNAi screen reveals essential therapeutic targets of breast cancer stem cells.
Arfaoui A, Rioualen C, Azzoni V, Pinna G, Finetti P, Wicinski J, Josselin E, Macario M, Castellano R, Léonard-Stumpf C, Bal A, Gros A, Lossy S, Kharrat M, Collette Y, Bertucci F, Birnbaum D, Douik H, Bidaut G, Charafe-Jauffret E, Ginestier C. Arfaoui A, et al. Among authors: rioualen c. EMBO Mol Med. 2019 Oct;11(10):e9930. doi: 10.15252/emmm.201809930. Epub 2019 Sep 2. EMBO Mol Med. 2019. PMID: 31476112 Free PMC article.
Integrating Bacterial ChIP-seq and RNA-seq Data With SnakeChunks.
Rioualen C, Charbonnier-Khamvongsa L, Collado-Vides J, van Helden J. Rioualen C, et al. Curr Protoc Bioinformatics. 2019 Jun;66(1):e72. doi: 10.1002/cpbi.72. Epub 2019 Feb 20. Curr Protoc Bioinformatics. 2019. PMID: 30786165 Free PMC article.
Sequanix: a dynamic graphical interface for Snakemake workflows.
Desvillechabrol D, Legendre R, Rioualen C, Bouchier C, van Helden J, Kennedy S, Cokelaer T. Desvillechabrol D, et al. Among authors: rioualen c. Bioinformatics. 2018 Jun 1;34(11):1934-1936. doi: 10.1093/bioinformatics/bty034. Bioinformatics. 2018. PMID: 29361152 Free PMC article.
Transcriptional Profiling of Midguts Prepared from Trypanosoma/T. congolense-Positive Glossina palpalis palpalis Collected from Two Distinct Cameroonian Foci: Coordinated Signatures of the Midguts' Remodeling As T. congolense-Supportive Niches.
Tsagmo Ngoune JM, Njiokou F, Loriod B, Kame-Ngasse G, Fernandez-Nunez N, Rioualen C, van Helden J, Geiger A. Tsagmo Ngoune JM, et al. Among authors: rioualen c. Front Immunol. 2017 Jul 28;8:876. doi: 10.3389/fimmu.2017.00876. eCollection 2017. Front Immunol. 2017. PMID: 28804485 Free PMC article.
miR-600 Acts as a Bimodal Switch that Regulates Breast Cancer Stem Cell Fate through WNT Signaling.
El Helou R, Pinna G, Cabaud O, Wicinski J, Bhajun R, Guyon L, Rioualen C, Finetti P, Gros A, Mari B, Barbry P, Bertucci F, Bidaut G, Harel-Bellan A, Birnbaum D, Charafe-Jauffret E, Ginestier C. El Helou R, et al. Among authors: rioualen c. Cell Rep. 2017 Feb 28;18(9):2256-2268. doi: 10.1016/j.celrep.2017.02.016. Cell Rep. 2017. PMID: 28249169 Free article.
13 results