Fang Z - Search Results

1

metaProbiotics: a tool for mining probiotic from metagenomic binning data based on a language model.

Wu S, Feng T, Tang W, Qi C, Gao J, He X, Wang J, Zhou H, Fang Z. Wu S, et al. Among authors: fang z. Brief Bioinform. 2024 Jan 22;25(2):bbae085. doi: 10.1093/bib/bbae085. Brief Bioinform. 2024. PMID: 38487846 Free PMC article.

2

PPR-Meta: a tool for identifying phages and plasmids from metagenomic fragments using deep learning.

Fang Z, Tan J, Wu S, Li M, Xu C, Xie Z, Zhu H. Fang Z, et al. Gigascience. 2019 Jun 1;8(6):giz066. doi: 10.1093/gigascience/giz066. Gigascience. 2019. PMID: 31220250 Free PMC article.

3

PlasGUN: gene prediction in plasmid metagenomic short reads using deep learning.

Fang Z, Tan J, Wu S, Li M, Wang C, Liu Y, Zhu H. Fang Z, et al. Bioinformatics. 2020 May 1;36(10):3239-3241. doi: 10.1093/bioinformatics/btaa103. Bioinformatics. 2020. PMID: 32091572 Free PMC article.

4

Identification of the conjugative and mobilizable plasmid fragments in the plasmidome using sequence signatures.

Fang Z, Zhou H. Fang Z, et al. Microb Genom. 2020 Nov;6(11):mgen000459. doi: 10.1099/mgen.0.000459. Epub 2020 Oct 19. Microb Genom. 2020. PMID: 33074084 Free PMC article.

5

VirionFinder: Identification of Complete and Partial Prokaryote Virus Virion Protein From Virome Data Using the Sequence and Biochemical Properties of Amino Acids.

Fang Z, Zhou H. Fang Z, et al. Front Microbiol. 2021 Feb 5;12:615711. doi: 10.3389/fmicb.2021.615711. eCollection 2021. Front Microbiol. 2021. PMID: 33613485 Free PMC article.

6

HoPhage: an ab initio tool for identifying hosts of phage fragments from metaviromes.

Tan J, Fang Z, Wu S, Guo Q, Jiang X, Zhu H. Tan J, et al. Among authors: fang z. Bioinformatics. 2022 Jan 3;38(2):543-545. doi: 10.1093/bioinformatics/btab585. Bioinformatics. 2022. PMID: 34383025 Free PMC article.

7

A Virtual Machine Platform for Non-Computer Professionals for Using Deep Learning to Classify Biological Sequences of Metagenomic Data.

Fang Z, Zhou H. Fang Z, et al. J Vis Exp. 2021 Sep 25;(175). doi: 10.3791/62250. J Vis Exp. 2021. PMID: 34633370

8

Corrigendum: VirionFinder: Identification of Complete and Partial Prokaryote Virus Virion Protein From Virome Data Using the Sequence and Biochemical Properties of Amino Acids.

Fang Z, Zhou H. Fang Z, et al. Front Microbiol. 2022 Jan 18;12:824018. doi: 10.3389/fmicb.2021.824018. eCollection 2021. Front Microbiol. 2022. PMID: 35116017 Free PMC article.

9

More Positive or More Negative? Metagenomic Analysis Reveals Roles of Virome in Human Disease-Related Gut Microbiome.

Li M, Wang C, Guo Q, Xu C, Xie Z, Tan J, Wu S, Wang P, Guo J, Fang Z, Zhu S, Duan L, Jiang X, Zhu H. Li M, et al. Among authors: fang z. Front Cell Infect Microbiol. 2022 Apr 12;12:846063. doi: 10.3389/fcimb.2022.846063. eCollection 2022. Front Cell Infect Microbiol. 2022. PMID: 35493727 Free PMC article.

10

DeePVP: Identification and classification of phage virion proteins using deep learning.

Fang Z, Feng T, Zhou H, Chen M. Fang Z, et al. Gigascience. 2022 Aug 11;11:giac076. doi: 10.1093/gigascience/giac076. Gigascience. 2022. PMID: 35950840 Free PMC article.

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