Du X - Search Results

1

Perspective: use and reuse of NMR-based metabolomics data: what works and what remains challenging.

Gouveia GJ, Head T, Cheng LL, Clendinen CS, Cort JR, Du X, Edison AS, Fleischer CC, Hoch J, Mercaldo N, Pathmasiri W, Raftery D, Schock TB, Sumner LW, Takis PG, Copié V, Eghbalnia HR, Powers R. Gouveia GJ, et al. Among authors: du x. Metabolomics. 2024 Mar 13;20(2):41. doi: 10.1007/s11306-024-02090-6. Metabolomics. 2024. PMID: 38480600 Review.

2

Training in metabolomics research. I. Designing the experiment, collecting and extracting samples and generating metabolomics data.

Barnes S, Benton HP, Casazza K, Cooper SJ, Cui X, Du X, Engler J, Kabarowski JH, Li S, Pathmasiri W, Prasain JK, Renfrow MB, Tiwari HK. Barnes S, et al. Among authors: du x. J Mass Spectrom. 2016 Jul;51(7):461-75. doi: 10.1002/jms.3782. J Mass Spectrom. 2016. PMID: 27434804 Free PMC article.

3

Training in metabolomics research. II. Processing and statistical analysis of metabolomics data, metabolite identification, pathway analysis, applications of metabolomics and its future.

Barnes S, Benton HP, Casazza K, Cooper SJ, Cui X, Du X, Engler J, Kabarowski JH, Li S, Pathmasiri W, Prasain JK, Renfrow MB, Tiwari HK. Barnes S, et al. Among authors: du x. J Mass Spectrom. 2016 Aug;51(8):535-548. doi: 10.1002/jms.3780. J Mass Spectrom. 2016. PMID: 28239968 Free PMC article.

4

ADAP-GC 3.2: Graphical Software Tool for Efficient Spectral Deconvolution of Gas Chromatography-High-Resolution Mass Spectrometry Metabolomics Data.

Smirnov A, Jia W, Walker DI, Jones DP, Du X. Smirnov A, et al. Among authors: du x. J Proteome Res. 2018 Jan 5;17(1):470-478. doi: 10.1021/acs.jproteome.7b00633. Epub 2017 Nov 7. J Proteome Res. 2018. PMID: 29076734

5

ADAP-GC 2.0: deconvolution of coeluting metabolites from GC/TOF-MS data for metabolomics studies.

Ni Y, Qiu Y, Jiang W, Suttlemyre K, Su M, Zhang W, Jia W, Du X. Ni Y, et al. Among authors: du x. Anal Chem. 2012 Aug 7;84(15):6619-29. doi: 10.1021/ac300898h. Epub 2012 Jul 12. Anal Chem. 2012. PMID: 22747237

6

ADAP-GC 3.0: Improved Peak Detection and Deconvolution of Co-eluting Metabolites from GC/TOF-MS Data for Metabolomics Studies.

Ni Y, Su M, Qiu Y, Jia W, Du X. Ni Y, et al. Among authors: du x. Anal Chem. 2016 Sep 6;88(17):8802-11. doi: 10.1021/acs.analchem.6b02222. Epub 2016 Aug 8. Anal Chem. 2016. PMID: 27461032 Free PMC article.

7

Metabolomics Data Preprocessing Using ADAP and MZmine 2.

Du X, Smirnov A, Pluskal T, Jia W, Sumner S. Du X, et al. Methods Mol Biol. 2020;2104:25-48. doi: 10.1007/978-1-0716-0239-3_3. Methods Mol Biol. 2020. PMID: 31953811 Free PMC article.

8

Detailed Investigation and Comparison of the XCMS and MZmine 2 Chromatogram Construction and Chromatographic Peak Detection Methods for Preprocessing Mass Spectrometry Metabolomics Data.

Myers OD, Sumner SJ, Li S, Barnes S, Du X. Myers OD, et al. Among authors: du x. Anal Chem. 2017 Sep 5;89(17):8689-8695. doi: 10.1021/acs.analchem.7b01069. Epub 2017 Aug 17. Anal Chem. 2017. PMID: 28752757

9

One Step Forward for Reducing False Positive and False Negative Compound Identifications from Mass Spectrometry Metabolomics Data: New Algorithms for Constructing Extracted Ion Chromatograms and Detecting Chromatographic Peaks.

Myers OD, Sumner SJ, Li S, Barnes S, Du X. Myers OD, et al. Among authors: du x. Anal Chem. 2017 Sep 5;89(17):8696-8703. doi: 10.1021/acs.analchem.7b00947. Epub 2017 Aug 17. Anal Chem. 2017. PMID: 28752754

10

ADAP-GC 4.0: Application of Clustering-Assisted Multivariate Curve Resolution to Spectral Deconvolution of Gas Chromatography-Mass Spectrometry Metabolomics Data.

Smirnov A, Qiu Y, Jia W, Walker DI, Jones DP, Du X. Smirnov A, et al. Among authors: du x. Anal Chem. 2019 Jul 16;91(14):9069-9077. doi: 10.1021/acs.analchem.9b01424. Epub 2019 Jul 5. Anal Chem. 2019. PMID: 31274283 Free PMC article.

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