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Predictive phage therapy for Escherichia coli urinary tract infections: Cocktail selection for therapy based on machine learning models.
Proc Natl Acad Sci U S A. 2024 Mar 19;121(12):e2313574121. doi: 10.1073/pnas.2313574121. Epub 2024 Mar 13.
Proc Natl Acad Sci U S A. 2024.
PMID: 38478693
Free PMC article.
The advantage of intergenic regions as genomic features for machine-learning-based host attribution of Salmonella Typhimurium from the USA.
Chalka A, Dallman TJ, Vohra P, Stevens MP, Gally DL.
Chalka A, et al.
Microb Genom. 2023 Oct;9(10):001116. doi: 10.1099/mgen.0.001116.
Microb Genom. 2023.
PMID: 37843883
Free PMC article.
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Predicting Host Association for Shiga Toxin-Producing E. coli Serogroups by Machine Learning.
Lupolova N, Chalka A, Gally DL.
Lupolova N, et al. Among authors: chalka a.
Methods Mol Biol. 2021;2291:99-117. doi: 10.1007/978-1-0716-1339-9_4.
Methods Mol Biol. 2021.
PMID: 33704750
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GRACy: A tool for analysing human cytomegalovirus sequence data.
Camiolo S, Suárez NM, Chalka A, Venturini C, Breuer J, Davison AJ.
Camiolo S, et al. Among authors: chalka a.
Virus Evol. 2020 Dec 30;7(1):veaa099. doi: 10.1093/ve/veaa099. eCollection 2021 Jan.
Virus Evol. 2020.
PMID: 33505707
Free PMC article.
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