Ma Q - Search Results

1

Graph Fourier transform for spatial omics representation and analyses of complex organs.

Chang Y, Liu J, Jiang Y, Ma A, Yeo YY, Guo Q, McNutt M, Krull J, Rodig SJ, Barouch DH, Nolan G, Xu D, Jiang S, Li Z, Liu B, Ma Q. Chang Y, et al. Among authors: ma a, ma q. Res Sq [Preprint]. 2024 Feb 15:rs.3.rs-3952048. doi: 10.21203/rs.3.rs-3952048/v1. Res Sq. 2024. Update in: Nat Commun. 2024 Aug 29;15(1):7467. doi: 10.1038/s41467-024-51590-5 PMID: 38410424 Free PMC article. Updated. Preprint.

2

A Central Edge Selection Based Overlapping Community Detection Algorithm for the Detection of Overlapping Structures in Protein⁻Protein Interaction Networks.

Zhang F, Ma A, Wang Z, Ma Q, Liu B, Huang L, Wang Y. Zhang F, et al. Among authors: ma a, ma q. Molecules. 2018 Oct 13;23(10):2633. doi: 10.3390/molecules23102633. Molecules. 2018. PMID: 30322177 Free PMC article.

3

Protein-protein interaction sites prediction by ensemble random forests with synthetic minority oversampling technique.

Wang X, Yu B, Ma A, Chen C, Liu B, Ma Q. Wang X, et al. Among authors: ma a, ma q. Bioinformatics. 2019 Jul 15;35(14):2395-2402. doi: 10.1093/bioinformatics/bty995. Bioinformatics. 2019. PMID: 30520961 Free PMC article.

4

MetaQUBIC: a computational pipeline for gene-level functional profiling of metagenome and metatranscriptome.

Ma A, Sun M, McDermaid A, Liu B, Ma Q. Ma A, et al. Among authors: ma q. Bioinformatics. 2019 Nov 1;35(21):4474-4477. doi: 10.1093/bioinformatics/btz414. Bioinformatics. 2019. PMID: 31116375 Free PMC article.

5

Prediction of regulatory motifs from human Chip-sequencing data using a deep learning framework.

Yang J, Ma A, Hoppe AD, Wang C, Li Y, Zhang C, Wang Y, Liu B, Ma Q. Yang J, et al. Among authors: ma a, ma q. Nucleic Acids Res. 2019 Sep 5;47(15):7809-7824. doi: 10.1093/nar/gkz672. Nucleic Acids Res. 2019. PMID: 31372637 Free PMC article.

6

QUBIC2: a novel and robust biclustering algorithm for analyses and interpretation of large-scale RNA-Seq data.

Xie J, Ma A, Zhang Y, Liu B, Cao S, Wang C, Xu J, Zhang C, Ma Q. Xie J, et al. Among authors: ma a, ma q. Bioinformatics. 2020 Feb 15;36(4):1143-1149. doi: 10.1093/bioinformatics/btz692. Bioinformatics. 2020. PMID: 31503285 Free PMC article.

7

MetaQUBIC: a computational pipeline for gene-level functional profiling of metagenome and metatranscriptome.

Ma A, Sun M, McDermaid A, Liu B, Ma Q. Ma A, et al. Among authors: ma q. Bioinformatics. 2019 Dec 15;35(24):5397. doi: 10.1093/bioinformatics/btz696. Bioinformatics. 2019. PMID: 31580397 Free PMC article. No abstract available.

8

Network analyses in microbiome based on high-throughput multi-omics data.

Liu Z, Ma A, Mathé E, Merling M, Ma Q, Liu B. Liu Z, et al. Among authors: ma a, ma q. Brief Bioinform. 2021 Mar 22;22(2):1639-1655. doi: 10.1093/bib/bbaa005. Brief Bioinform. 2021. PMID: 32047891 Free PMC article. Review.

9

IRIS3: integrated cell-type-specific regulon inference server from single-cell RNA-Seq.

Ma A, Wang C, Chang Y, Brennan FH, McDermaid A, Liu B, Zhang C, Popovich PG, Ma Q. Ma A, et al. Among authors: ma q. Nucleic Acids Res. 2020 Jul 2;48(W1):W275-W286. doi: 10.1093/nar/gkaa394. Nucleic Acids Res. 2020. PMID: 32421805 Free PMC article.

10

Integrative Methods and Practical Challenges for Single-Cell Multi-omics.

Ma A, McDermaid A, Xu J, Chang Y, Ma Q. Ma A, et al. Among authors: ma q. Trends Biotechnol. 2020 Sep;38(9):1007-1022. doi: 10.1016/j.tibtech.2020.02.013. Epub 2020 Mar 26. Trends Biotechnol. 2020. PMID: 32818441 Free PMC article. Review.

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