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Page 1
Folding paper models of biostructures for outreach and education.
Goodsell DS, Dutta S, Hudson BP, Voigt M, Burley SK, Zardecki C. Goodsell DS, et al. Among authors: burley sk. Patterns (N Y). 2024 Feb 9;5(2):100931. doi: 10.1016/j.patter.2024.100931. eCollection 2024 Feb 9. Patterns (N Y). 2024. PMID: 38370120 Free PMC article.
A comprehensive survey of coronaviral main protease active site diversity in 3D: Identifying and analyzing drug discovery targets in search of broad specificity inhibitors for the next coronavirus pandemic.
Lubin JH, Martinusen SG, Zardecki C, Olivas C, Bacorn M, Balogun M, Slaton EW, Wu AW, Sakeer S, Hudson BP, Denard CA, Burley SK, Khare SD. Lubin JH, et al. Among authors: burley sk. bioRxiv [Preprint]. 2023 Jan 31:2023.01.30.526101. doi: 10.1101/2023.01.30.526101. bioRxiv. 2023. PMID: 36778399 Free PMC article. Preprint.
Restraint validation of biomolecular structures determined by NMR in the Protein Data Bank.
Baskaran K, Ploskon E, Tejero R, Yokochi M, Harrus D, Liang Y, Peisach E, Persikova I, Ramelot TA, Sekharan M, Tolchard J, Westbrook JD, Bardiaux B, Schwieters CD, Patwardhan A, Velankar S, Burley SK, Kurisu G, Hoch JC, Montelione GT, Vuister GW, Young JY. Baskaran K, et al. Among authors: burley sk. Structure. 2024 Jun 6;32(6):824-837.e1. doi: 10.1016/j.str.2024.02.011. Epub 2024 Mar 14. Structure. 2024. PMID: 38490206 Free article.
Structural models of SARS-CoV-2 Omicron variant in complex with ACE2 receptor or antibodies suggest altered binding interfaces.
Lubin JH, Markosian C, Balamurugan D, Pasqualini R, Arap W, Burley SK, Khare SD. Lubin JH, et al. Among authors: burley sk. bioRxiv [Preprint]. 2021 Dec 13:2021.12.12.472313. doi: 10.1101/2021.12.12.472313. bioRxiv. 2021. Update in: JCI Insight. 2023 Jul 10;8(13):e168296. doi: 10.1172/jci.insight.168296 PMID: 34931193 Free PMC article. Updated. Preprint.
Design and proof-of-concept for targeted phage-based COVID-19 vaccination strategies with a streamlined cold-free supply chain.
Staquicini DI, Tang FHF, Markosian C, Yao VJ, Staquicini FI, Dodero-Rojas E, Contessoto VG, Davis D, O'Brien P, Habib N, Smith TL, Bruiners N, Sidman RL, Gennaro ML, Lattime EC, Libutti SK, Whitford PC, Burley SK, Onuchic JN, Arap W, Pasqualini R. Staquicini DI, et al. Among authors: burley sk. bioRxiv [Preprint]. 2021 Mar 16:2021.03.15.435496. doi: 10.1101/2021.03.15.435496. bioRxiv. 2021. Update in: Proc Natl Acad Sci U S A. 2021 Jul 27;118(30):e2105739118. doi: 10.1073/pnas.2105739118 PMID: 33758865 Free PMC article. Updated. Preprint.
Apropos of Universal Epitope Discovery for COVID-19 Vaccines: A Framework for Targeted Phage Display-Based Delivery and Integration of New Evaluation Tools.
Markosian C, Staquicini DI, Dogra P, Dodero-Rojas E, Tang FHF, Smith TL, Contessoto VG, Libutti SK, Wang Z, Cristini V, Whitford PC, Burley SK, Onuchic JN, Pasqualini R, Arap W. Markosian C, et al. Among authors: burley sk. bioRxiv [Preprint]. 2021 Aug 30:2021.08.30.458222. doi: 10.1101/2021.08.30.458222. bioRxiv. 2021. Update in: Mol Biol Evol. 2022 May 3;39(5):msac091. doi: 10.1093/molbev/msac091 PMID: 34676381 Free PMC article. Updated. Preprint.
Prediction of peptide structural conformations with AlphaFold2.
Ille AM, Markosian C, Burley SK, Pasqualini R, Arap W. Ille AM, et al. Among authors: burley sk. bioRxiv [Preprint]. 2025 Jan 4:2024.12.03.626727. doi: 10.1101/2024.12.03.626727. bioRxiv. 2025. PMID: 39677766 Free PMC article. Preprint.
Updated resources for exploring experimentally-determined PDB structures and Computed Structure Models at the RCSB Protein Data Bank.
Burley SK, Bhatt R, Bhikadiya C, Bi C, Biester A, Biswas P, Bittrich S, Blaumann S, Brown R, Chao H, Chithari VR, Craig PA, Crichlow GV, Duarte JM, Dutta S, Feng Z, Flatt JW, Ghosh S, Goodsell DS, Green RK, Guranovic V, Henry J, Hudson BP, Joy M, Kaelber JT, Khokhriakov I, Lai JS, Lawson CL, Liang Y, Myers-Turnbull D, Peisach E, Persikova I, Piehl DW, Pingale A, Rose Y, Sagendorf J, Sali A, Segura J, Sekharan M, Shao C, Smith J, Trumbull M, Vallat B, Voigt M, Webb B, Whetstone S, Wu-Wu A, Xing T, Young JY, Zalevsky A, Zardecki C. Burley SK, et al. Nucleic Acids Res. 2025 Jan 6;53(D1):D564-D574. doi: 10.1093/nar/gkae1091. Nucleic Acids Res. 2025. PMID: 39607707 Free PMC article.
332 results