Yamashita Y - Search Results

1

Phylogeny-linked occurrence of ribosome stalling on the mRNAs of Arabidopsis unfolded protein response factor bZIP60 orthologs in divergent plant species.

Imamichi T, Kusumoto N, Aoyama H, Takamatsu S, Honda Y, Muraoka S, Hagiwara-Komoda Y, Chiba Y, Onouchi H, Yamashita Y, Naito S. Imamichi T, et al. Among authors: yamashita y. Nucleic Acids Res. 2024 May 8;52(8):4276-4294. doi: 10.1093/nar/gkae101. Nucleic Acids Res. 2024. PMID: 38366760 Free PMC article.

2

S-adenosyl-L-methionine induces compaction of nascent peptide chain inside the ribosomal exit tunnel upon translation arrest in the Arabidopsis CGS1 gene.

Onoue N, Yamashita Y, Nagao N, Goto DB, Onouchi H, Naito S. Onoue N, et al. Among authors: yamashita y. J Biol Chem. 2011 Apr 29;286(17):14903-12. doi: 10.1074/jbc.M110.211656. Epub 2011 Feb 18. J Biol Chem. 2011. PMID: 21335553 Free PMC article.

3

SS-mPMG and SS-GA: tools for finding pathways and dynamic simulation of metabolic networks.

Katsuragi T, Ono N, Yasumoto K, Altaf-Ul-Amin M, Hirai MY, Sriyudthsak K, Sawada Y, Yamashita Y, Chiba Y, Onouchi H, Fujiwara T, Naito S, Shiraishi F, Kanaya S. Katsuragi T, et al. Among authors: yamashita y. Plant Cell Physiol. 2013 May;54(5):728-39. doi: 10.1093/pcp/pct052. Epub 2013 Apr 9. Plant Cell Physiol. 2013. PMID: 23574698

4

A halt in poly(A) shortening during S-adenosyl-L-methionine-induced translation arrest in CGS1 mRNA of Arabidopsis thaliana.

Yamashita Y, Lambein I, Kobayashi S, Onouchi H, Chiba Y, Naito S. Yamashita Y, et al. Genes Genet Syst. 2013;88(4):241-9. doi: 10.1266/ggs.88.241. Genes Genet Syst. 2013. PMID: 24463527 Free article.

5

Ribosomes in a stacked array: elucidation of the step in translation elongation at which they are stalled during S-adenosyl-L-methionine-induced translation arrest of CGS1 mRNA.

Yamashita Y, Kadokura Y, Sotta N, Fujiwara T, Takigawa I, Satake A, Onouchi H, Naito S. Yamashita Y, et al. J Biol Chem. 2014 May 2;289(18):12693-704. doi: 10.1074/jbc.M113.526616. Epub 2014 Mar 20. J Biol Chem. 2014. PMID: 24652291 Free PMC article.

6

The N-terminal cleavable pre-sequence encoded in the first exon of cystathionine γ-synthase contains two different functional domains for chloroplast targeting and regulation of gene expression.

Hagiwara-Komoda Y, Sugiyama T, Yamashita Y, Onouchi H, Naito S. Hagiwara-Komoda Y, et al. Among authors: yamashita y. Plant Cell Physiol. 2014 Oct;55(10):1779-92. doi: 10.1093/pcp/pcu110. Epub 2014 Aug 20. Plant Cell Physiol. 2014. PMID: 25146485

7

A U-system approach for predicting metabolic behaviors and responses based on an alleged metabolic reaction network.

Sriyudthsak K, Sawada Y, Chiba Y, Yamashita Y, Kanaya S, Onouchi H, Fujiwara T, Naito S, Voit EO, Shiraishi F, Hirai MY. Sriyudthsak K, et al. Among authors: yamashita y. BMC Syst Biol. 2014;8 Suppl 5(Suppl 5):S4. doi: 10.1186/1752-0509-8-S5-S4. Epub 2014 Dec 12. BMC Syst Biol. 2014. PMID: 25559748 Free PMC article.

8

The Minimum Open Reading Frame, AUG-Stop, Induces Boron-Dependent Ribosome Stalling and mRNA Degradation.

Tanaka M, Sotta N, Yamazumi Y, Yamashita Y, Miwa K, Murota K, Chiba Y, Hirai MY, Akiyama T, Onouchi H, Naito S, Fujiwara T. Tanaka M, et al. Among authors: yamashita y. Plant Cell. 2016 Nov;28(11):2830-2849. doi: 10.1105/tpc.16.00481. Epub 2016 Oct 19. Plant Cell. 2016. PMID: 27760805 Free PMC article.

9

Sucrose sensing through nascent peptide-meditated ribosome stalling at the stop codon of Arabidopsis bZIP11 uORF2.

Yamashita Y, Takamatsu S, Glasbrenner M, Becker T, Naito S, Beckmann R. Yamashita Y, et al. FEBS Lett. 2017 May;591(9):1266-1277. doi: 10.1002/1873-3468.12634. Epub 2017 Apr 10. FEBS Lett. 2017. PMID: 28369795 Free article.

10

Identification of Arabidopsis thaliana upstream open reading frames encoding peptide sequences that cause ribosomal arrest.

Hayashi N, Sasaki S, Takahashi H, Yamashita Y, Naito S, Onouchi H. Hayashi N, et al. Among authors: yamashita y. Nucleic Acids Res. 2017 Sep 6;45(15):8844-8858. doi: 10.1093/nar/gkx528. Nucleic Acids Res. 2017. PMID: 28637336 Free PMC article.

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