Baldoni PL - Search Results

1

Quantifying the HIV reservoir with dilution assays and deep viral sequencing.

Lotspeich SC, Richardson BD, Baldoni PL, Enders KP, Hudgens MG. Lotspeich SC, et al. Among authors: baldoni pl. Biometrics. 2024 Jan 29;80(1):ujad018. doi: 10.1093/biomtc/ujad018. Biometrics. 2024. PMID: 38364812

2

The differential short- and long-term effects of HIV-1 latency-reversing agents on T cell function.

Clutton G, Xu Y, Baldoni PL, Mollan KR, Kirchherr J, Newhard W, Cox K, Kuruc JD, Kashuba A, Barnard R, Archin N, Gay CL, Hudgens MG, Margolis DM, Goonetilleke N. Clutton G, et al. Among authors: baldoni pl. Sci Rep. 2016 Aug 2;6:30749. doi: 10.1038/srep30749. Sci Rep. 2016. PMID: 27480951 Free PMC article.

3

Quantification of the Latent HIV-1 Reservoir Using Ultra Deep Sequencing and Primer ID in a Viral Outgrowth Assay.

Lee SK, Zhou S, Baldoni PL, Spielvogel E, Archin NM, Hudgens MG, Margolis DM, Swanstrom R. Lee SK, et al. Among authors: baldoni pl. J Acquir Immune Defic Syndr. 2017 Feb 1;74(2):221-228. doi: 10.1097/QAI.0000000000001187. J Acquir Immune Defic Syndr. 2017. PMID: 27683060 Free PMC article.

4

SLDAssay: A software package and web tool for analyzing limiting dilution assays.

Trumble IM, Allmon AG, Archin NM, Rigdon J, Francis O, Baldoni PL, Hudgens MG. Trumble IM, et al. Among authors: baldoni pl. J Immunol Methods. 2017 Nov;450:10-16. doi: 10.1016/j.jim.2017.07.004. Epub 2017 Jul 18. J Immunol Methods. 2017. PMID: 28733216 Free PMC article.

5

Improved detection of epigenomic marks with mixed-effects hidden Markov models.

Baldoni PL, Rashid NU, Ibrahim JG. Baldoni PL, et al. Biometrics. 2019 Dec;75(4):1401-1413. doi: 10.1111/biom.13083. Epub 2019 Oct 17. Biometrics. 2019. PMID: 31081192 Free PMC article.

6

Precise and accurate power of the rank-sum test for a continuous outcome.

Mollan KR, Trumble IM, Reifeis SA, Ferrer O, Bay CP, Baldoni PL, Hudgens MG. Mollan KR, et al. Among authors: baldoni pl. J Biopharm Stat. 2020 Jul 3;30(4):639-648. doi: 10.1080/10543406.2020.1730866. Epub 2020 Mar 4. J Biopharm Stat. 2020. PMID: 32126888 Free PMC article.

7

Efficient detection and classification of epigenomic changes under multiple conditions.

Baldoni PL, Rashid NU, Ibrahim JG. Baldoni PL, et al. Biometrics. 2022 Sep;78(3):1141-1154. doi: 10.1111/biom.13477. Epub 2021 May 3. Biometrics. 2022. PMID: 33860525

8

Corrigendum: The differential short- and long-term effects of HIV-1 latency-reversing agents on T cell function.

Clutton G, Xu Y, Baldoni PL, Mollan KR, Kirchherr J, Newhard W, Cox K, Kuruc JD, Kashuba A, Barnard R, Archin N, Gay CL, Hudgens MG, Margolis DM, Goonetilleke N. Clutton G, et al. Among authors: baldoni pl. Sci Rep. 2016 Oct 3;6:34430. doi: 10.1038/srep34430. Sci Rep. 2016. PMID: 27694881 Free PMC article. No abstract available.

9

Comparisons of statistical methods for handling attrition in a follow-up visit with complex survey sampling.

Cai J, Zeng D, Li H, Butera NM, Baldoni PL, Maitra P, Dong L. Cai J, et al. Among authors: baldoni pl. Stat Med. 2023 May 20;42(11):1641-1668. doi: 10.1002/sim.9692. Epub 2023 Mar 7. Stat Med. 2023. PMID: 37183765 Free PMC article.

10

Benchmarking long-read RNA-sequencing analysis tools using in silico mixtures.

Dong X, Du MRM, Gouil Q, Tian L, Jabbari JS, Bowden R, Baldoni PL, Chen Y, Smyth GK, Amarasinghe SL, Law CW, Ritchie ME. Dong X, et al. Among authors: baldoni pl. Nat Methods. 2023 Nov;20(11):1810-1821. doi: 10.1038/s41592-023-02026-3. Epub 2023 Oct 2. Nat Methods. 2023. PMID: 37783886

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