Troyanskaya OG - Search Results

1

Tapioca: a platform for predicting de novo protein-protein interactions in dynamic contexts.

Reed TJ, Tyl MD, Tadych A, Troyanskaya OG, Cristea IM. Reed TJ, et al. Among authors: troyanskaya og. Nat Methods. 2024 Mar;21(3):488-500. doi: 10.1038/s41592-024-02179-9. Epub 2024 Feb 15. Nat Methods. 2024. PMID: 38361019

2

Targeted exploration and analysis of large cross-platform human transcriptomic compendia.

Zhu Q, Wong AK, Krishnan A, Aure MR, Tadych A, Zhang R, Corney DC, Greene CS, Bongo LA, Kristensen VN, Charikar M, Li K, Troyanskaya OG. Zhu Q, et al. Among authors: troyanskaya og. Nat Methods. 2015 Mar;12(3):211-4, 3 p following 214. doi: 10.1038/nmeth.3249. Epub 2015 Jan 12. Nat Methods. 2015. PMID: 25581801 Free PMC article.

3

IMP 2.0: a multi-species functional genomics portal for integration, visualization and prediction of protein functions and networks.

Wong AK, Krishnan A, Yao V, Tadych A, Troyanskaya OG. Wong AK, et al. Among authors: troyanskaya og. Nucleic Acids Res. 2015 Jul 1;43(W1):W128-33. doi: 10.1093/nar/gkv486. Epub 2015 May 12. Nucleic Acids Res. 2015. PMID: 25969450 Free PMC article.

4

Predicting effects of noncoding variants with deep learning-based sequence model.

Zhou J, Troyanskaya OG. Zhou J, et al. Among authors: troyanskaya og. Nat Methods. 2015 Oct;12(10):931-4. doi: 10.1038/nmeth.3547. Epub 2015 Aug 24. Nat Methods. 2015. PMID: 26301843 Free PMC article.

5

Interactive Big Data Resource to Elucidate Human Immune Pathways and Diseases.

Gorenshteyn D, Zaslavsky E, Fribourg M, Park CY, Wong AK, Tadych A, Hartmann BM, Albrecht RA, García-Sastre A, Kleinstein SH, Troyanskaya OG, Sealfon SC. Gorenshteyn D, et al. Among authors: troyanskaya og. Immunity. 2015 Sep 15;43(3):605-14. doi: 10.1016/j.immuni.2015.08.014. Epub 2015 Sep 8. Immunity. 2015. PMID: 26362267 Free PMC article.

6

Genome-wide prediction and functional characterization of the genetic basis of autism spectrum disorder.

Krishnan A, Zhang R, Yao V, Theesfeld CL, Wong AK, Tadych A, Volfovsky N, Packer A, Lash A, Troyanskaya OG. Krishnan A, et al. Among authors: troyanskaya og. Nat Neurosci. 2016 Nov;19(11):1454-1462. doi: 10.1038/nn.4353. Epub 2016 Aug 1. Nat Neurosci. 2016. PMID: 27479844 Free PMC article.

7

Transcriptome analysis of adult Caenorhabditis elegans cells reveals tissue-specific gene and isoform expression.

Kaletsky R, Yao V, Williams A, Runnels AM, Tadych A, Zhou S, Troyanskaya OG, Murphy CT. Kaletsky R, et al. Among authors: troyanskaya og. PLoS Genet. 2018 Aug 10;14(8):e1007559. doi: 10.1371/journal.pgen.1007559. eCollection 2018 Aug. PLoS Genet. 2018. PMID: 30096138 Free PMC article.

8

Interpretation of an individual functional genomics experiment guided by massive public data.

Lee YS, Wong AK, Tadych A, Hartmann BM, Park CY, DeJesus VA, Ramos I, Zaslavsky E, Sealfon SC, Troyanskaya OG. Lee YS, et al. Among authors: troyanskaya og. Nat Methods. 2018 Dec;15(12):1049-1052. doi: 10.1038/s41592-018-0218-5. Epub 2018 Nov 26. Nat Methods. 2018. PMID: 30478325 Free PMC article.

9

Selene: a PyTorch-based deep learning library for sequence data.

Chen KM, Cofer EM, Zhou J, Troyanskaya OG. Chen KM, et al. Among authors: troyanskaya og. Nat Methods. 2019 Apr;16(4):315-318. doi: 10.1038/s41592-019-0360-8. Epub 2019 Mar 28. Nat Methods. 2019. PMID: 30923381 Free PMC article.

10

Accurate genome-wide predictions of spatio-temporal gene expression during embryonic development.

Zhou J, Schor IE, Yao V, Theesfeld CL, Marco-Ferreres R, Tadych A, Furlong EEM, Troyanskaya OG. Zhou J, et al. Among authors: troyanskaya og. PLoS Genet. 2019 Sep 25;15(9):e1008382. doi: 10.1371/journal.pgen.1008382. eCollection 2019 Sep. PLoS Genet. 2019. PMID: 31553718 Free PMC article.

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