Yang Y - Search Results

1

DiffDec: Structure-Aware Scaffold Decoration with an End-to-End Diffusion Model.

Xie J, Chen S, Lei J, Yang Y. Xie J, et al. Among authors: yang y. J Chem Inf Model. 2024 Apr 8;64(7):2554-2564. doi: 10.1021/acs.jcim.3c01466. Epub 2024 Jan 24. J Chem Inf Model. 2024. PMID: 38267393

2

Identifying Structure-Property Relationships through SMILES Syntax Analysis with Self-Attention Mechanism.

Zheng S, Yan X, Yang Y, Xu J. Zheng S, et al. Among authors: yang y. J Chem Inf Model. 2019 Feb 25;59(2):914-923. doi: 10.1021/acs.jcim.8b00803. Epub 2019 Feb 6. J Chem Inf Model. 2019. PMID: 30669836

3

SPOT-Peptide: Template-Based Prediction of Peptide-Binding Proteins and Peptide-Binding Sites.

Litfin T, Yang Y, Zhou Y. Litfin T, et al. Among authors: yang y. J Chem Inf Model. 2019 Feb 25;59(2):924-930. doi: 10.1021/acs.jcim.8b00777. Epub 2019 Feb 14. J Chem Inf Model. 2019. PMID: 30698427

4

To Improve Protein Sequence Profile Prediction through Image Captioning on Pairwise Residue Distance Map.

Chen S, Sun Z, Lin L, Liu Z, Liu X, Chong Y, Lu Y, Zhao H, Yang Y. Chen S, et al. Among authors: yang y. J Chem Inf Model. 2020 Jan 27;60(1):391-399. doi: 10.1021/acs.jcim.9b00438. Epub 2019 Dec 20. J Chem Inf Model. 2020. PMID: 31800243

5

Predicting Retrosynthetic Reactions Using Self-Corrected Transformer Neural Networks.

Zheng S, Rao J, Zhang Z, Xu J, Yang Y. Zheng S, et al. Among authors: yang y. J Chem Inf Model. 2020 Jan 27;60(1):47-55. doi: 10.1021/acs.jcim.9b00949. Epub 2019 Dec 24. J Chem Inf Model. 2020. PMID: 31825611

6

Accurately Predicting Mutation-Caused Stability Changes from Protein Sequences Using Extreme Gradient Boosting.

Lv X, Chen J, Lu Y, Chen Z, Xiao N, Yang Y. Lv X, et al. Among authors: yang y. J Chem Inf Model. 2020 Apr 27;60(4):2388-2395. doi: 10.1021/acs.jcim.0c00064. Epub 2020 Mar 30. J Chem Inf Model. 2020. PMID: 32203653

7

Meta Learning for Low-Resource Molecular Optimization.

Wang J, Zheng S, Chen J, Yang Y. Wang J, et al. Among authors: yang y. J Chem Inf Model. 2021 Apr 26;61(4):1627-1636. doi: 10.1021/acs.jcim.0c01416. Epub 2021 Mar 17. J Chem Inf Model. 2021. PMID: 33729779

8

AlphaFold2-aware protein-DNA binding site prediction using graph transformer.

Yuan Q, Chen S, Rao J, Zheng S, Zhao H, Yang Y. Yuan Q, et al. Among authors: yang y. Brief Bioinform. 2022 Mar 10;23(2):bbab564. doi: 10.1093/bib/bbab564. Brief Bioinform. 2022. PMID: 35039821

9

Structure-Aware Multimodal Deep Learning for Drug-Protein Interaction Prediction.

Wang P, Zheng S, Jiang Y, Li C, Liu J, Wen C, Patronov A, Qian D, Chen H, Yang Y. Wang P, et al. Among authors: yang y. J Chem Inf Model. 2022 Mar 14;62(5):1308-1317. doi: 10.1021/acs.jcim.2c00060. Epub 2022 Feb 24. J Chem Inf Model. 2022. PMID: 35200015

10

Alignment-free metal ion-binding site prediction from protein sequence through pretrained language model and multi-task learning.

Yuan Q, Chen S, Wang Y, Zhao H, Yang Y. Yuan Q, et al. Among authors: yang y. Brief Bioinform. 2022 Nov 19;23(6):bbac444. doi: 10.1093/bib/bbac444. Brief Bioinform. 2022. PMID: 36274238

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