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Page 1
High-quality peptide evidence for annotating non-canonical open reading frames as human proteins.
Deutsch EW, Kok LW, Mudge JM, Ruiz-Orera J, Fierro-Monti I, Sun Z, Abelin JG, Alba MM, Aspden JL, Bazzini AA, Bruford EA, Brunet MA, Calviello L, Carr SA, Carvunis AR, Chothani S, Clauwaert J, Dean K, Faridi P, Frankish A, Hubner N, Ingolia NT, Magrane M, Martin MJ, Martinez TF, Menschaert G, Ohler U, Orchard S, Rackham O, Roucou X, Slavoff SA, Valen E, Wacholder A, Weissman JS, Wu W, Xie Z, Choudhary J, Bassani-Sternberg M, Vizcaíno JA, Ternette N, Moritz RL, Prensner JR, van Heesch S. Deutsch EW, et al. Among authors: wacholder a. bioRxiv [Preprint]. 2024 Sep 9:2024.09.09.612016. doi: 10.1101/2024.09.09.612016. bioRxiv. 2024. PMID: 39314370 Free PMC article. Preprint.
Cellular processing of beneficial de novo emerging proteins.
Houghton CJ, Coelho NC, Chiang A, Hedayati S, Parikh SB, Ozbaki-Yagan N, Wacholder A, Iannotta J, Berger A, Carvunis AR, O'Donnell AF. Houghton CJ, et al. Among authors: wacholder a. bioRxiv [Preprint]. 2024 Aug 29:2024.08.28.610198. doi: 10.1101/2024.08.28.610198. bioRxiv. 2024. PMID: 39257767 Free PMC article. Preprint.
Integrative detection of genome-wide translation using iRibo.
Turcan A, Lee J, Wacholder A, Carvunis AR. Turcan A, et al. Among authors: wacholder a. STAR Protoc. 2024 Mar 15;5(1):102826. doi: 10.1016/j.xpro.2023.102826. Epub 2024 Jan 12. STAR Protoc. 2024. PMID: 38217852 Free PMC article.
On the illusion of auxotrophy: met15Δ yeast cells can grow on inorganic sulfur, thanks to the previously uncharacterized homocysteine synthase Yll058w.
Van Oss SB, Parikh SB, Castilho Coelho N, Wacholder A, Belashov I, Zdancewicz S, Michaca M, Xu J, Kang YP, Ward NP, Yoon SJ, McCourt KM, McKee J, Ideker T, VanDemark AP, DeNicola GM, Carvunis AR. Van Oss SB, et al. Among authors: wacholder a. J Biol Chem. 2022 Dec;298(12):102697. doi: 10.1016/j.jbc.2022.102697. Epub 2022 Nov 13. J Biol Chem. 2022. PMID: 36379252 Free PMC article.
Evolutionary Characterization of the Short Protein SPAAR.
Lee J, Wacholder A, Carvunis AR. Lee J, et al. Among authors: wacholder a. Genes (Basel). 2021 Nov 24;12(12):1864. doi: 10.3390/genes12121864. Genes (Basel). 2021. PMID: 34946813 Free PMC article.
18 results